CuGenDBv2

Gene ID	CSPI06G07460
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LITAF domain-containing protein
Genome location	Chr6:6319155..6321566
RNA-Seq Expression	CSPI06G07460
Synteny	CSPI06G07460
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]

8.4e-77

98.51

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDP GVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

2.0e-78

100

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

XP_008459901.1 PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]

3.2e-76

97.76

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDP GVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]

2.4e-68

89.47

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]

3.2e-68

89.47

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+PLY GNNPYQAGQIP NAIFGDP GVPIQQTMYRDTPAPF CVYCGNSGLT +RSKISSAAVVGCM PF+LGVCFL PSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP
        CPSCKEKVGDFEK+DRCAVMDPP+WTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

9.7e-79

100

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

A0A1S3CCH3 uncharacterized protein LOC103498881

1.5e-76

97.76

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDP GVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

4.1e-77

98.51

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDP GVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG

A0A6J1GS01 GSH-induced LITAF domain protein

2.0e-68

89.47

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP

A0A6J1JVN9 GSH-induced LITAF domain protein

1.2e-68

89.47

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Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

2.0e-57

72.18

Show/hide

Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+GLT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP
        CP C  KV DFEK D C VMDPP W QPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.4e-58

72.18

Show/hide

Query:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+GLT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP
        CP C  KV DFEK D C VMDPP W QPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALP

Sequences

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CDS sequence

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ATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGT
TCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCG
TTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGAT
TTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGA

mRNA sequence

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GGTTTTGACTTCGTAATTATTATTTGAATTCCGTTTTCTATCAATTGCTTCAAACAGAGAGAGAGAGACGAAGCTTACCGAGCGAAAATGTCCAAGAACCACGAGCCGGT
CGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACC
GCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATG
TTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGC
TGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGATTTTGAGGAGCTACTATTTTCCCGTGTGGTTATTTAGCATCATTTGCATTCAGTACTT
GCGATACTCTTGTGCTATTTTTGTGATGTTTTTGTGATGTTTTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAGCCAAGTA
CATGTTTTGTTTTTGGTATCTTACCGCTTGTAAATACCTTGTTCTTACACTGGCATTGCTGTTTATATACATTACTGCTGCTAGCCTAATTTGGACCAAATCTTTCCATA
GACCTCTTGATCTTGATCATTCATCTCACAACTGGAAATGGTATGCATTTGTTCAATTCATTTCCTTGAATCATCCATGTGGCTTTCTTTTTCTTCTTGATTTGTTTATC
GAAACAAATTCAAAAGCAAATATGGGTTGCCATGGCCTGCTTGAATTCTGATCAATAATGTTACTATCTGGTTCCACACAAGTAAACAATGAAGAAATATTTTGGAAAAG
ATAATATACCTGACTTCATTGGAGTCTTGCACAGATACAGGGAAAAAGAATTGAAGTTGGATACCAAGGTTCGCAATGTGGAAGCGAAGGTTCGACATGAGAAATAAGAG
CCGGTCTCGATAGCCAAAGTGACTGCCTGCATGGATATGACACAACAGGGTTTGATGGCAGCCTTTTATCGATAATCCCTTCATAAAGTTGCAATCTGCAGGCAAGTCAT
CCTTGGCTACAATACACGACTCTCCATTCCCATGTCAAACCTTCCTTCCTCATAAATCAGGTAAAGAATTAAAGCGTCCTGTTGTATGTTGAAAGTTGAATGCAAAAGTT
GTGTCCTTTAAGAACCAAAAGGGATATTATGTATATATGTATGTATGTATGTTCGTATGTGTGCATTGGAGTTTGGTTTTTATAAGTTAAAATTATTAGCTGCAGCTCAA
GAACAACAAT

Protein sequence

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MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGD
FEKLDRCAVMDPPHWTQPSYALPG

CSPI06G07460 (gene) of Cucumber (PI 183967) v1 genome