; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G09240 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G09240
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr6:7802245..7803547
RNA-Seq ExpressionCSPI06G09240
SyntenyCSPI06G09240
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039309.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-5558.51Show/hide
Query:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK
        +IYR + KK  L I+NL W PID S  + LCA F E +I+  I SF  NKAP P GFP+ F+KS W  LK DI++ F DF  KGVINKN+NNT+I+LI K
Subjt:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK

Query:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        KKDYS   +FRPISLTTS+YK + K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK ++   F+ K+D+EKAFD +N
Subjt:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

KAA0050815.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-5357.45Show/hide
Query:  KIYRINKKLE-LLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK
        K+YR +   E L I+NL W PID S  + LCA F E +I+  I SF+ NKAP P GFP+ F+KS W  LK DI+  F DF  KGVINKN+NNT+I+LI K
Subjt:  KIYRINKKLE-LLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK

Query:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        KK+YS   +FRPISLTTS+YKI+ K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK +    F+ K+D+EKAFD ++
Subjt:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

KAA0058104.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-5659.57Show/hide
Query:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK
        +IYR + KK  L I+NL W PID S  + LCA F E +I+  I SF  NKAP P GFP+ F+KS W  LK DIM+ F DF  KGVINKN+NNT+I+LI K
Subjt:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK

Query:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        KKDYS   +FRPISLTTS+YKI+ K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK ++   F+ K+D+EKAFD +N
Subjt:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

KAA0063661.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.8e-5558.29Show/hide
Query:  IYRINKKLE-LLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKK
        +YR + K++ L IDNL W PID S  + LCA F E +I+  I SF+ NKAP P GFP+ F+KS W  LK DI+  F DF  KGVINKN+NNTFI+LI KK
Subjt:  IYRINKKLE-LLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKK

Query:  KDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        K+YS   +FRPISLTTS+YKI+ K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK ++   F+ K+D+EKAFD ++
Subjt:  KDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-5558.51Show/hide
Query:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK
        +IYR + KK  L I+NL W PID S  + LCA F E +I+  I SF  NKAP P GFP+ F+KS W  LK DI++ F DF  KGVINKN+NNT+I+LI K
Subjt:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK

Query:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        KKDYS   +FRPISLTTS+YK + K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK ++   F+ K+D+EKAFD +N
Subjt:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

TrEMBL top hitse value%identityAlignment
A0A5A7TDG1 LINE-1 retrotransposable element ORF2 protein8.6e-5658.51Show/hide
Query:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK
        +IYR + KK  L I+NL W PID S  + LCA F E +I+  I SF  NKAP P GFP+ F+KS W  LK DI++ F DF  KGVINKN+NNT+I+LI K
Subjt:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK

Query:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        KKDYS   +FRPISLTTS+YK + K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK ++   F+ K+D+EKAFD +N
Subjt:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

A0A5A7UB20 LINE-1 retrotransposable element ORF2 protein1.0e-5357.45Show/hide
Query:  KIYRINKKLE-LLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK
        K+YR +   E L I+NL W PID S  + LCA F E +I+  I SF+ NKAP P GFP+ F+KS W  LK DI+  F DF  KGVINKN+NNT+I+LI K
Subjt:  KIYRINKKLE-LLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK

Query:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        KK+YS   +FRPISLTTS+YKI+ K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK +    F+ K+D+EKAFD ++
Subjt:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

A0A5A7USG2 LINE-1 retrotransposable element ORF2 protein1.7e-5659.57Show/hide
Query:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK
        +IYR + KK  L I+NL W PID S  + LCA F E +I+  I SF  NKAP P GFP+ F+KS W  LK DIM+ F DF  KGVINKN+NNT+I+LI K
Subjt:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK

Query:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        KKDYS   +FRPISLTTS+YKI+ K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK ++   F+ K+D+EKAFD +N
Subjt:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

A0A5A7VD46 LINE-1 retrotransposable element ORF2 protein4.3e-5558.29Show/hide
Query:  IYRINKKLE-LLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKK
        +YR + K++ L IDNL W PID S  + LCA F E +I+  I SF+ NKAP P GFP+ F+KS W  LK DI+  F DF  KGVINKN+NNTFI+LI KK
Subjt:  IYRINKKLE-LLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKK

Query:  KDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        K+YS   +FRPISLTTS+YKI+ K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK ++   F+ K+D+EKAFD ++
Subjt:  KDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein8.6e-5658.51Show/hide
Query:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK
        +IYR + KK  L I+NL W PID S  + LCA F E +I+  I SF  NKAP P GFP+ F+KS W  LK DI++ F DF  KGVINKN+NNT+I+LI K
Subjt:  KIYRIN-KKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK

Query:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
        KKDYS   +FRPISLTTS+YK + K L+NRLK TLP+T+  NQ  F+ NR+ITDAIL ANEA+DYWK ++   F+ K+D+EKAFD +N
Subjt:  KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein8.9e-1031.65Show/hide
Query:  KIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKK-KDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLP
        +I + I S    K+P P GF  EFY+     L   +++ F     +G++  +     I LI K  +D +   NFRPISL     KI+ K+LANR+++ + 
Subjt:  KIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKK-KDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLP

Query:  NTVVDNQFTFV-------NNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTI
          +  +Q  F+       N RK  + I   N A D      +   +  ID EKAFD I
Subjt:  NTVVDNQFTFV-------NNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTI

P08548 LINE-1 reverse transcriptase homolog2.4e-1031.01Show/hide
Query:  KIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKK-KDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLP
        +I STI +    K+P P GF  EFY++    L   ++  F +   +G++        I+LI K  KD +   N+RPISL     KI+ K+L NR+++ + 
Subjt:  KIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKK-KDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLP

Query:  NTVVDNQFTFV-------NNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTI
          +  +Q  F+       N RK  + I   N      K + +   +  ID EKAFD I
Subjt:  NTVVDNQFTFV-------NNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTI

P11369 LINE-1 retrotransposable element ORF2 protein3.4e-0930.26Show/hide
Query:  KIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK-KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLP
        +I + I S    K+P P GF  EFY++    L   + + F+    +G +  +     I+LI K +KD +   NFRPISL     KI+ K+LANR++  + 
Subjt:  KIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVK-KKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLP

Query:  NTVVDNQFTFVNNRKITDAILSANEAVDYW-KARRRTCFVFKIDLEKAFDTI
          +  +Q  F+   +    I  +   + Y  K + +   +  +D EKAFD I
Subjt:  NTVVDNQFTFVNNRKITDAILSANEAVDYW-KARRRTCFVFKIDLEKAFDTI

P14381 Transposon TX1 uncharacterized 149 kDa protein9.5e-1229.79Show/hide
Query:  NNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKKKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFV
        +NK+P   G  +EF++  W  L  D      +   KG +  +     +SL+ KK D  L  N+RP+SL ++ YKIV K ++ RLK  L   +  +Q   V
Subjt:  NNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKKKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFV

Query:  NNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN
          R I D +    + + + +    +     +D EKAFD ++
Subjt:  NNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFDTIN

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein3.9e-0834.04Show/hide
Query:  LCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKKKDYSLTSNFRPISLTTSLYKIV
        L A   + +I + + +   NKAP P  F  EF+  SW  +K+  +    +F   G + K  N T I+LI K       S FRP+S  T +YKI+
Subjt:  LCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIMEFFNDFHSKGVINKNVNNTFISLIVKKKDYSLTSNFRPISLTTSLYKIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGATTCAAAAATTTGATTAACAAGCACAACTTATTGGATCATCCTCTTAGCAACAACAAGTTCACTTGGTCTAATCTTCGAGCAAGACCAACATGCTCCAGAAA
AATATACCGTATCAACAAGAAGCTTGAGTTGTTGATTGACAATCTAAATTGGAGGCCTATTGATTTGAGCGTGCACAATTTTCTTTGTGCTCGTTTCGAGGAAATGAAAA
TTAGAAGCACTATATTATCTTTCAAAAACAACAAAGCACCAAGTCCATATGGTTTCCCTTTGGAATTTTACAAAAGCTCTTGGACTTTCCTTAAGAATGACATTATGGAG
TTCTTCAACGACTTTCATTCAAAAGGGGTGATAAACAAAAACGTCAACAACACTTTCATATCTCTGATTGTAAAGAAAAAAGACTACTCCTTGACATCTAATTTCAGACC
TATAAGTCTTACTACCTCGCTCTATAAGATAGTACCAAAGGTGTTAGCTAACAGACTAAAAAGGACACTACCAAATACTGTTGTGGATAACCAGTTCACCTTTGTGAACA
ACAGAAAAATCACAGATGCTATATTATCAGCAAATGAAGCGGTAGACTACTGGAAAGCTAGAAGGAGAACATGTTTTGTCTTTAAAATTGATTTGGAAAAAGCTTTTGAC
ACAATTAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGATTCAAAAATTTGATTAACAAGCACAACTTATTGGATCATCCTCTTAGCAACAACAAGTTCACTTGGTCTAATCTTCGAGCAAGACCAACATGCTCCAGAAA
AATATACCGTATCAACAAGAAGCTTGAGTTGTTGATTGACAATCTAAATTGGAGGCCTATTGATTTGAGCGTGCACAATTTTCTTTGTGCTCGTTTCGAGGAAATGAAAA
TTAGAAGCACTATATTATCTTTCAAAAACAACAAAGCACCAAGTCCATATGGTTTCCCTTTGGAATTTTACAAAAGCTCTTGGACTTTCCTTAAGAATGACATTATGGAG
TTCTTCAACGACTTTCATTCAAAAGGGGTGATAAACAAAAACGTCAACAACACTTTCATATCTCTGATTGTAAAGAAAAAAGACTACTCCTTGACATCTAATTTCAGACC
TATAAGTCTTACTACCTCGCTCTATAAGATAGTACCAAAGGTGTTAGCTAACAGACTAAAAAGGACACTACCAAATACTGTTGTGGATAACCAGTTCACCTTTGTGAACA
ACAGAAAAATCACAGATGCTATATTATCAGCAAATGAAGCGGTAGACTACTGGAAAGCTAGAAGGAGAACATGTTTTGTCTTTAAAATTGATTTGGAAAAAGCTTTTGAC
ACAATTAACTAG
Protein sequenceShow/hide protein sequence
MDRFKNLINKHNLLDHPLSNNKFTWSNLRARPTCSRKIYRINKKLELLIDNLNWRPIDLSVHNFLCARFEEMKIRSTILSFKNNKAPSPYGFPLEFYKSSWTFLKNDIME
FFNDFHSKGVINKNVNNTFISLIVKKKDYSLTSNFRPISLTTSLYKIVPKVLANRLKRTLPNTVVDNQFTFVNNRKITDAILSANEAVDYWKARRRTCFVFKIDLEKAFD
TIN