CuGenDBv2

Gene ID	CSPI06G09250
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Nuclear transcription factor Y subunit B-3
Genome location	Chr6:7818752..7819288
RNA-Seq Expression	CSPI06G09250
Synteny	CSPI06G09250
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060802.1 uncharacterized protein E6C27_scaffold137G00220 [Cucumis melo var. makuwa]

1.3e-80

89.25

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQ------EEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDD
        MSMLYFSISKR+SLPI+KFVQ      EEEEEEEEEDQK+LTFFSDHLKSSSASAPT  DLLSESECADDNFTTTEESEVEWPYFDHRF K R+PHRSDD
Subjt:  MSMLYFSISKRNSLPIRKFVQ------EEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDD

Query:  GSISDEESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        GSISDEESLIEIALPTGHYVSRKFDDV  DEDEDD  FRYQKL+DFQ+KNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  GSISDEESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

TYK11971.1 uncharacterized protein E5676_scaffold177G001550 [Cucumis melo var. makuwa]

2.2e-80

91.11

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
        MSMLYFSISKR+SLPI+KFVQ E+EEEEEEDQK+LTFFSDHLKSSSASAPT  DLLSESECADDNFTTTEESEVEWPYFDHRF K R+PHRSDDGSISDE
Subjt:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE

Query:  ESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVSRKFDDV  DEDEDD  FRYQKL+DFQ+KNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_008464163.1 PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]

2.2e-80

91.11

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
        MSMLYFSISKR+SLPI+KFVQ E+EEEEEEDQK+LTFFSDHLKSSSASAPT  DLLSESECADDNFTTTEESEVEWPYFDHRF K R+PHRSDDGSISDE
Subjt:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE

Query:  ESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVSRKFDDV  DEDEDD  FRYQKL+DFQ+KNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_011656887.2 uncharacterized protein LOC105435780 [Cucumis sativus]

1.0e-90

100

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
        MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
Subjt:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE

Query:  ESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_038902685.1 uncharacterized protein LOC120089322 [Benincasa hispida]

2.6e-78

89.39

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
        MSMLYFSISKRNSLPI+KFVQ+ +EEEEEEDQK+LTFFSDHLKSSS SAPT  DLLSESECADDNFTTTEESEVEWPYFDHR  K  NP RSDDGSISDE
Subjt:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE

Query:  ESLIEIALPTGHYVSRKFDDV-DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVS KFDDV DEDED +SFRYQKL+DFQ+KNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSRKFDDV-DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCP7 Uncharacterized protein

5.2e-88

98.31

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
        MSMLYFSISKRNSLPIRKFVQ   EEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
Subjt:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE

Query:  ESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A1S3CMD0 uncharacterized protein LOC103502111

1.0e-80

91.11

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
        MSMLYFSISKR+SLPI+KFVQ E+EEEEEEDQK+LTFFSDHLKSSSASAPT  DLLSESECADDNFTTTEESEVEWPYFDHRF K R+PHRSDDGSISDE
Subjt:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE

Query:  ESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVSRKFDDV  DEDEDD  FRYQKL+DFQ+KNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A5A7UY43 Uncharacterized protein

6.1e-81

89.25

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQ------EEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDD
        MSMLYFSISKR+SLPI+KFVQ      EEEEEEEEEDQK+LTFFSDHLKSSSASAPT  DLLSESECADDNFTTTEESEVEWPYFDHRF K R+PHRSDD
Subjt:  MSMLYFSISKRNSLPIRKFVQ------EEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDD

Query:  GSISDEESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        GSISDEESLIEIALPTGHYVSRKFDDV  DEDEDD  FRYQKL+DFQ+KNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  GSISDEESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A5D3CJH9 Uncharacterized protein

1.0e-80

91.11

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE
        MSMLYFSISKR+SLPI+KFVQ E+EEEEEEDQK+LTFFSDHLKSSSASAPT  DLLSESECADDNFTTTEESEVEWPYFDHRF K R+PHRSDDGSISDE
Subjt:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDE

Query:  ESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVSRKFDDV  DEDEDD  FRYQKL+DFQ+KNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSRKFDDV--DEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1FUA8 uncharacterized protein LOC111448485

3.6e-57

72.28

Show/hide

Query:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFF-SDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISD
        MSMLYFSISK N  P+ K + +++++E    QK+LTF  SDH   SSASAPT+ DLLSESECADDNFTTTEESEVEWP+FD   +   N +RSDDGSISD
Subjt:  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFF-SDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISD

Query:  EESLIEIALPTGHYVSRKF-DDVDEDEDDISFRYQKLTDFQ----RKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVS K  DD D+DEDD+SF +QKL++FQ    +KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSRKF-DDVDEDEDDISFRYQKLTDFQ----RKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G04480.1 unknown protein

4.7e-17

48.42

Show/hide

Query:  NKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        N  +     DDG+I D+ESLIE++LP+GHY+   ++       +  + + K+ DF+   L ++L EIND  EE+NLIEIDIS+GSIKYSRFEI+A
Subjt:  NKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

AT5G35870.1 unknown protein

2.1e-12

34.72

Show/hide

Query:  FFSDHLKSSSASAPT--IEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQK
        FFS      S   P   ++DL  +    +   ++T  +++            +N +  DDG+I DEESLIE++LP+GHY+   +  +   +D     Y  
Subjt:  FFSDHLKSSSASAPT--IEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDDISFRYQK

Query:  LTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        + DF+   L+++ AE     E++NLIEIDIS+GSIK SRF+I+A
Subjt:  LTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCATGCTTTATTTCTCAATCTCCAAAAGGAACTCACTACCTATTCGGAAATTTGTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAGAAACAACTGACCTT
TTTTTCTGATCACTTGAAATCGTCGTCGGCGTCAGCTCCAACGATCGAAGACTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGACCACCGAGGAATCTGAAG
TGGAGTGGCCGTATTTTGACCATCGGTTCAATAAAACCAGAAACCCGCACCGGTCTGATGACGGTTCGATTTCCGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACT
GGACATTACGTCAGCCGTAAGTTTGATGACGTCGACGAGGACGAGGACGACATATCGTTTCGTTACCAGAAACTGACGGATTTTCAAAGGAAGAATCTTGTGGAGGTGTT
GGCTGAAATTAACGACATCAATGAGGAGGAAAATTTGATCGAAATCGACATATCAATGGGCTCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPT
GHYVSRKFDDVDEDEDDISFRYQKLTDFQRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA

CSPI06G09250 (gene) of Cucumber (PI 183967) v1 genome