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CSPI06G09420 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G09420
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr6:8034975..8035359
RNA-Seq ExpressionCSPI06G09420
SyntenyCSPI06G09420
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036882.1 uncharacterized protein E6C27_scaffold2534G00010 [Cucumis melo var. makuwa]8.9e-1660.49Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       I+ASESDRC+RFERGLR EIRTP+ AIAKWTN  QLVET LRV+QSI   KL ++ S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

KAA0037805.1 uncharacterized protein E6C27_scaffold918G00190 [Cucumis melo var. makuwa]1.5e-1560.49Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       I+ASESDRC+RFERGLR EIRTP+ AIAKWTN  QLVET LRV+QSI   K V++ S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

KAA0051348.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1561.73Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       IVASESDRC+RFERGLR EIRTP+ AIAKWTN  QLVET LRV+QSI   K V++ S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

KAA0059911.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1561.73Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       IVASESDRC+RFERGLR EIRTP+ AIAKWTN  QLVET LRV+QSI   K  +K S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

KAA0060864.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa]1.8e-1662.96Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       IVASESDRC+RFERGLR EIRTP+IAIAKWTN  QLVET LRV+QSI   KL ++ S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

TrEMBL top hitse value%identityAlignment
A0A5A7T0C1 Retrotrans_gag domain-containing protein4.3e-1660.49Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       I+ASESDRC+RFERGLR EIRTP+ AIAKWTN  QLVET LRV+QSI   KL ++ S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

A0A5A7T8K4 Retrotrans_gag domain-containing protein7.3e-1660.49Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       I+ASESDRC+RFERGLR EIRTP+ AIAKWTN  QLVET LRV+QSI   K V++ S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

A0A5A7U7T7 Reverse transcriptase5.6e-1661.73Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       IVASESDRC+RFERGLR EIRTP+ AIAKWTN  QLVET LRV+QSI   K V++ S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

A0A5A7V0L5 Retrotransposon protein, putative, Ty3-gypsy sub-class8.7e-1762.96Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       IVASESDRC+RFERGLR EIRTP+IAIAKWTN  QLVET LRV+QSI   KL ++ S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

A0A5A7V2E0 Reverse transcriptase5.6e-1661.73Show/hide
Query:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS
        + EYER+YT+       IVASESDRC+RFERGLR EIRTP+ AIAKWTN  QLVET LRV+QSI   K  +K S+G    S
Subjt:  MTEYEREYTK------AIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGTATGAGAGGGAGTATACTAAGGCTATAGTAGCATCTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCATGAGATTCGTACCCCAATTATAGC
TATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAACTGTTTTGCGAGTAAAGCAGAGCATAGAAGGACCAAAGCTAGTGTTGAAGCCTAGTAAAGGGGCCCATCCAG
TAAGCGAGACTTTAAGAGCCGTCTTGGTGGTCCGTCCTCAAGACAACGTAGTGCAAGGAGTGCCTCTCAAAGATAGAGTTAGAGGACTTCTAGTCAACCGATTAGGTCGA
TGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGTATGAGAGGGAGTATACTAAGGCTATAGTAGCATCTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCATGAGATTCGTACCCCAATTATAGC
TATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAACTGTTTTGCGAGTAAAGCAGAGCATAGAAGGACCAAAGCTAGTGTTGAAGCCTAGTAAAGGGGCCCATCCAG
TAAGCGAGACTTTAAGAGCCGTCTTGGTGGTCCGTCCTCAAGACAACGTAGTGCAAGGAGTGCCTCTCAAAGATAGAGTTAGAGGACTTCTAGTCAACCGATTAGGTCGA
TGA
Protein sequenceShow/hide protein sequence
MTEYEREYTKAIVASESDRCKRFERGLRHEIRTPIIAIAKWTNIFQLVETVLRVKQSIEGPKLVLKPSKGAHPVSETLRAVLVVRPQDNVVQGVPLKDRVRGLLVNRLGR