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CSPI06G09470 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G09470
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr6:8082896..8083237
RNA-Seq ExpressionCSPI06G09470
SyntenyCSPI06G09470
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33753.1 hypothetical protein [Cucumis melo subsp. melo]1.2e-2864.55Show/hide
Query:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII
        MYSQG+ M  +EM G R  ++ E RNCSSGSKRKQG +HYE V+VI + ME  NDQL A  +W K+K +TEVELH EVVKQLQDI ELR+RDR KLMQI+
Subjt:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII

Query:  FHMVDDIEGF
        F  V+ IEGF
Subjt:  FHMVDDIEGF

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.3e-3266.67Show/hide
Query:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII
        MYSQG+ M PDEM G R  ++ E +NCSSGSKRKQG +HYE V+VI + +E  NDQL AIANW KEKRATEVEL  EV+KQLQDI EL++RDR KL+QI+
Subjt:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII

Query:  FHMVDDIEGFLSCP
        F  V+ IEGFLS P
Subjt:  FHMVDDIEGFLSCP

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-2964.91Show/hide
Query:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII
        MYSQG+ M  DEM GTR  ++ E RNCSS SKRKQG QHYE V+VI + M+  NDQL AIA+WLKEKRA +VEL   VVKQLQDI +L+ RDR K++QI+
Subjt:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII

Query:  FHMVDDIEGFLSCP
        FH V+ IEGFLS P
Subjt:  FHMVDDIEGFLSCP

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-3065.79Show/hide
Query:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII
        MYSQG+ M  +EM G R  ++ E RNCSSGSKRK+G +HYE V+VI + ME  NDQL  IANW KEKR TEVEL  EVVKQLQ+I EL +RDR KLMQI+
Subjt:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII

Query:  FHMVDDIEGFLSCP
        FH V+ IEGFLS P
Subjt:  FHMVDDIEGFLSCP

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]3.5e-5295.54Show/hide
Query:  MYSQGLDMPPDEMLGTRRSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFH
        MYSQGLDMPPDEMLGTR+S EGRNCSSGSKRK GGQHYEAVDVISNEMEVRNDQL AIANW KEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFH
Subjt:  MYSQGLDMPPDEMLGTRRSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFH

Query:  MVDDIEGFLSCP
        MVDDIEGFLSCP
Subjt:  MVDDIEGFLSCP

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein1.7e-5295.54Show/hide
Query:  MYSQGLDMPPDEMLGTRRSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFH
        MYSQGLDMPPDEMLGTR+S EGRNCSSGSKRK GGQHYEAVDVISNEMEVRNDQL AIANW KEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFH
Subjt:  MYSQGLDMPPDEMLGTRRSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFH

Query:  MVDDIEGFLSCP
        MVDDIEGFLSCP
Subjt:  MVDDIEGFLSCP

A0A5A7SQU2 Putative nuclease HARBI12.6e-3266.67Show/hide
Query:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII
        MYSQG+ M PDEM G R  ++ E +NCSSGSKRKQG +HYE V+VI + +E  NDQL AIANW KEKRATEVEL  EV+KQLQDI EL++RDR KL+QI+
Subjt:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII

Query:  FHMVDDIEGFLSCP
        F  V+ IEGFLS P
Subjt:  FHMVDDIEGFLSCP

A0A5A7UDQ3 Retrotransposon protein5.9e-2964.55Show/hide
Query:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII
        MYSQG+ M  +EM G R  ++ E RNCSSGSKRKQG +HYE V+VI + ME  NDQL A  +W K+K +TEVELH EVVKQLQDI ELR+RDR KLMQI+
Subjt:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII

Query:  FHMVDDIEGF
        F  V+ IEGF
Subjt:  FHMVDDIEGF

A0A5D3CT52 Retrotransposon protein1.1e-3065.79Show/hide
Query:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII
        MYSQG+ M  +EM G R  ++ E RNCSSGSKRK+G +HYE V+VI + ME  NDQL  IANW KEKR TEVEL  EVVKQLQ+I EL +RDR KLMQI+
Subjt:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII

Query:  FHMVDDIEGFLSCP
        FH V+ IEGFLS P
Subjt:  FHMVDDIEGFLSCP

A0A5D3CVB7 Retrotransposon protein9.2e-3064.91Show/hide
Query:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII
        MYSQG+ M  DEM GTR  ++ E RNCSS SKRKQG QHYE V+VI + M+  NDQL AIA+WLKEKRA +VEL   VVKQLQDI +L+ RDR K++QI+
Subjt:  MYSQGLDMPPDEMLGTR--RSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQII

Query:  FHMVDDIEGFLSCP
        FH V+ IEGFLS P
Subjt:  FHMVDDIEGFLSCP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGCCAAGGACTGGATATGCCACCAGATGAGATGTTAGGAACACGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGAAAACAAGGTGGCCAACA
TTATGAAGCGGTAGATGTGATCAGTAATGAAATGGAAGTTAGAAATGATCAGTTAAATGCAATTGCAAATTGGTTGAAAGAAAAGCGTGCAACAGAGGTCGAATTGCATG
TTGAAGTAGTGAAACAACTACAAGATATATCTGAACTACGGACACGAGATAGGGTAAAGCTTATGCAAATCATATTCCATATGGTGGATGACATAGAGGGATTCTTGTCG
TGTCCAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTATAGCCAAGGACTGGATATGCCACCAGATGAGATGTTAGGAACACGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGAAAACAAGGTGGCCAACA
TTATGAAGCGGTAGATGTGATCAGTAATGAAATGGAAGTTAGAAATGATCAGTTAAATGCAATTGCAAATTGGTTGAAAGAAAAGCGTGCAACAGAGGTCGAATTGCATG
TTGAAGTAGTGAAACAACTACAAGATATATCTGAACTACGGACACGAGATAGGGTAAAGCTTATGCAAATCATATTCCATATGGTGGATGACATAGAGGGATTCTTGTCG
TGTCCAGCATAA
Protein sequenceShow/hide protein sequence
MYSQGLDMPPDEMLGTRRSGEGRNCSSGSKRKQGGQHYEAVDVISNEMEVRNDQLNAIANWLKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLS
CPA