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CSPI06G10040 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G10040
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionlong chain base biosynthesis protein 1-like
Genome locationChr6:8664489..8664751
RNA-Seq ExpressionCSPI06G10040
SyntenyCSPI06G10040
Gene Ontology termsGO:0046512 - sphingosine biosynthetic process (biological process)
GO:0046513 - ceramide biosynthetic process (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016020 - membrane (cellular component)
GO:0004758 - serine C-palmitoyltransferase activity (molecular function)
InterPro domainsIPR015421 - Pyridoxal phosphate-dependent transferase, major domain
IPR015424 - Pyridoxal phosphate-dependent transferase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060920.1 long chain base biosynthesis protein 1 isoform X1 [Cucumis melo var. makuwa]5.9e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
XP_004142873.1 long chain base biosynthesis protein 1 [Cucumis sativus]5.9e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
XP_008444597.1 PREDICTED: long chain base biosynthesis protein 1 isoform X1 [Cucumis melo]5.9e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
XP_008444598.1 PREDICTED: long chain base biosynthesis protein 1 isoform X2 [Cucumis melo]5.9e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
XP_038886708.1 long chain base biosynthesis protein 1 [Benincasa hispida]2.6e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+ +   + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
TrEMBL top hitse value%identityAlignment
A0A0A0KG23 Uncharacterized protein4.2e-3098.53Show/hide
Query:  MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIK+KEQYRFGVLLDESNSFGVHGCT
Subjt:  MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
A0A0A0LKR2 Aminotran_1_2 domain-containing protein2.9e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
A0A1S3BA75 long chain base biosynthesis protein 1 isoform X12.9e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
A0A1S3BAN2 long chain base biosynthesis protein 1 isoform X22.9e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
A0A5A7V0R4 Long chain base biosynthesis protein 1 isoform X12.9e-1062.9Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        TL+     + R+K     + V  ++ NSGKIAPLDEIIKLKEQYRF VLLDESNSFGV GCT
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
SwissProt top hitse value%identityAlignment
Q10P01 Long chain base biosynthesis protein 1a1.5e-0850Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
        TL+ L   ++R++     + V  ++ NSG+IAPLDEI++LKE+YRF V+L+ES+SFGV G
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
Q55FL5 Serine palmitoyltransferase 18.3e-0758.97Show/hide
Query:  LFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
        L+ NSG IAPL +I+K KEQY+F +++DES+S GV G T
Subjt:  LFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT
Q6K8E7 Long chain base biosynthesis protein 1b1.5e-0850Show/hide
Query:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
        TL+ L   ++R++     + V  ++ NSG+IAPLDEI++LKE+YRF V+L+ES+SFGV G
Subjt:  TLDLLAVTHRRSKP--PLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
Q7G4P2 Long chain base biosynthesis protein 1c1.5e-0861.9Show/hide
Query:  LAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
        + V  ++ NSG+IAPLDEI++LKE+YRF V+L+ES+SFGV G
Subjt:  LAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
Q94IB8 Long chain base biosynthesis protein 12.8e-1055Show/hide
Query:  TLDLLAVTHRRSK--PPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
        TL+ +   ++RSK     +    ++ NSG+IAPLDEI+KLKE+YRF V+LDESNSFGV G
Subjt:  TLDLLAVTHRRSK--PPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
Arabidopsis top hitse value%identityAlignment
AT4G36480.1 long-chain base12.0e-1155Show/hide
Query:  TLDLLAVTHRRSK--PPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
        TL+ +   ++RSK     +    ++ NSG+IAPLDEI+KLKE+YRF V+LDESNSFGV G
Subjt:  TLDLLAVTHRRSK--PPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
AT4G36480.2 long-chain base12.0e-1155Show/hide
Query:  TLDLLAVTHRRSK--PPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG
        TL+ +   ++RSK     +    ++ NSG+IAPLDEI+KLKE+YRF V+LDESNSFGV G
Subjt:  TLDLLAVTHRRSK--PPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAACCCTTGCACACCCAAACCCTAGATCTGCTTGCCGTCACTCATCGTCGTTCAAAGCCGCCTCTCCTCGCGGTCATGTTTTTATTTATGAATTCTGGTAAAAT
TGCACCATTGGATGAGATCATCAAATTGAAGGAGCAGTATCGATTTGGTGTTTTGTTGGATGAAAGCAACTCTTTTGGCGTACATGGCTGTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGAAACCCTTGCACACCCAAACCCTAGATCTGCTTGCCGTCACTCATCGTCGTTCAAAGCCGCCTCTCCTCGCGGTCATGTTTTTATTTATGAATTCTGGTAAAAT
TGCACCATTGGATGAGATCATCAAATTGAAGGAGCAGTATCGATTTGGTGTTTTGTTGGATGAAAGCAACTCTTTTGGCGTACATGGCTGTACTTGA
Protein sequenceShow/hide protein sequence
MTKPLHTQTLDLLAVTHRRSKPPLLAVMFLFMNSGKIAPLDEIIKLKEQYRFGVLLDESNSFGVHGCT