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CSPI06G10560 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G10560
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr6:9173888..9174292
RNA-Seq ExpressionCSPI06G10560
SyntenyCSPI06G10560
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025975.1 uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa]7.0e-2353.47Show/hide
Query:  RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAV
        R+ G   V WEEF K  ++KFY  SFCD K  +F+SL+QGDMT+ +YEK+FT+LA+YTL FV DE DKCK F + L+ +I   +TAS+NWS+F+K+V+  
Subjt:  RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAV

Query:  V
        +
Subjt:  V

KAA0033814.1 uncharacterized protein E6C27_scaffold1735G00090 [Cucumis melo var. makuwa]9.4e-2860.4Show/hide
Query:  RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAV
        R D +  VTWEEF K F+NKFY  SFCDAK ++F+S VQG++ +AKYEK FT+L +Y L FV DET KCK+FE KLK KI+TS+TA+M+W +FAK+ EA 
Subjt:  RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAV

Query:  V
        +
Subjt:  V

KAE8646859.1 hypothetical protein Csa_020892 [Cucumis sativus]1.5e-4997.09Show/hide
Query:  MTRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVE
        MTRIDGMGSVTWEEFDKVFQNKFYH SFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCK FEDKLKGKIITSMTA MNWSNFAKVVE
Subjt:  MTRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVE

Query:  AVV
        AVV
Subjt:  AVV

TYK04983.1 uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]7.2e-2851.59Show/hide
Query:  GMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRV
        G G V WEEF K F++KFY HSFCDAK N+ ++LV+G++T+A YEK FT+LA+Y L FV DETDKCK FE+ L+ +II  +T SM+  +F+K+VEA +RV
Subjt:  GMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRV

Query:  KRSLAKEEKNKNAKEGSNIQNVSNIR
        +R +  ++KNK +K+    Q+  ++R
Subjt:  KRSLAKEEKNKNAKEGSNIQNVSNIR

WP_217833235.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.4e-2354Show/hide
Query:  GSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKR
        GS+TW +F K FQ K+Y  SFCD K  EF++LVQG MT+A+YEK FT+LA+Y L  + +E  KCK FED L+ +I T +TAS  W++FAK+VEA +R ++
Subjt:  GSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKR

TrEMBL top hitse value%identityAlignment
A0A5A7SND8 Retrotrans_gag domain-containing protein3.4e-2353.47Show/hide
Query:  RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAV
        R+ G   V WEEF K  ++KFY  SFCD K  +F+SL+QGDMT+ +YEK+FT+LA+YTL FV DE DKCK F + L+ +I   +TAS+NWS+F+K+V+  
Subjt:  RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAV

Query:  V
        +
Subjt:  V

A0A5A7TTP8 Retrotrans_gag domain-containing protein2.9e-2249.55Show/hide
Query:  MTRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVE
        + R+ G+  +  E F + FQ KFY  SF D K  EF+ LVQ DMT+A+YEK FT+LA+YT++F+ DE +K K FE  L+  I TS+T S NWS+F K+++
Subjt:  MTRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVE

Query:  AVVRVKRSLAK
        A +R++R LAK
Subjt:  AVVRVKRSLAK

A0A5D3BWX9 Retrotrans_gag domain-containing protein4.4e-2351.46Show/hide
Query:  MTRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVE
        + R+ G   V WEEF K  ++KFY  SFCD K  +F+SL+QGDMT+ +YEK+FT+LA+YT+ FV DE DKCK F + L+ +I   +TAS+NWS+F+K+V+
Subjt:  MTRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVE

Query:  AVV
          +
Subjt:  AVV

A0A5D3BZ05 Retrotrans_gag domain-containing protein3.5e-2851.59Show/hide
Query:  GMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRV
        G G V WEEF K F++KFY HSFCDAK N+ ++LV+G++T+A YEK FT+LA+Y L FV DETDKCK FE+ L+ +II  +T SM+  +F+K+VEA +RV
Subjt:  GMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRV

Query:  KRSLAKEEKNKNAKEGSNIQNVSNIR
        +R +  ++KNK +K+    Q+  ++R
Subjt:  KRSLAKEEKNKNAKEGSNIQNVSNIR

A0A5D3DE46 Retrotrans_gag domain-containing protein4.6e-2860.4Show/hide
Query:  RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAV
        R D +  VTWEEF K F+NKFY  SFCDAK ++F+S VQG++ +AKYEK FT+L +Y L FV DET KCK+FE KLK KI+TS+TA+M+W +FAK+ EA 
Subjt:  RIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAV

Query:  V
        +
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAGAATAGACGGAATGGGCTCCGTTACATGGGAGGAGTTCGATAAAGTGTTTCAGAACAAGTTCTACCATCATTCCTTTTGCGATGCAAAGATGAATGAATTTAT
AAGTTTAGTTCAAGGCGACATGACCATTGCAAAATATGAGAAAATGTTTACTAAATTGGCTCAGTACACATTAGTCTTCGTGTTTGACGAGACAGACAAATGTAAGCATT
TTGAGGACAAATTAAAGGGAAAAATCATAACATCAATGACGGCCAGCATGAACTGGTCAAATTTTGCTAAAGTAGTTGAAGCTGTCGTGCGAGTTAAGAGAAGCTTGGCA
AAGGAAGAGAAAAACAAGAATGCAAAGGAAGGCTCAAACATTCAAAATGTTAGTAACATACGAGGTGGTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGAGAATAGACGGAATGGGCTCCGTTACATGGGAGGAGTTCGATAAAGTGTTTCAGAACAAGTTCTACCATCATTCCTTTTGCGATGCAAAGATGAATGAATTTAT
AAGTTTAGTTCAAGGCGACATGACCATTGCAAAATATGAGAAAATGTTTACTAAATTGGCTCAGTACACATTAGTCTTCGTGTTTGACGAGACAGACAAATGTAAGCATT
TTGAGGACAAATTAAAGGGAAAAATCATAACATCAATGACGGCCAGCATGAACTGGTCAAATTTTGCTAAAGTAGTTGAAGCTGTCGTGCGAGTTAAGAGAAGCTTGGCA
AAGGAAGAGAAAAACAAGAATGCAAAGGAAGGCTCAAACATTCAAAATGTTAGTAACATACGAGGTGGTGAGTGA
Protein sequenceShow/hide protein sequence
MTRIDGMGSVTWEEFDKVFQNKFYHHSFCDAKMNEFISLVQGDMTIAKYEKMFTKLAQYTLVFVFDETDKCKHFEDKLKGKIITSMTASMNWSNFAKVVEAVVRVKRSLA
KEEKNKNAKEGSNIQNVSNIRGGE