CuGenDBv2

Gene ID	CSPI06G11030
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L20
Genome location	Chr6:9654595..9659296
RNA-Seq Expression	CSPI06G11030
Synteny	CSPI06G11030
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139908.1 uncharacterized protein LOC101216644 [Cucumis sativus]

1.3e-63

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_008456292.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo]

2.2e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_022943497.1 uncharacterized protein LOC111448251 [Cucurbita moschata]

6.4e-63

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

8.4e-63

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SM+V
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

XP_038901625.1 50S ribosomal protein L20 [Benincasa hispida]

1.4e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KD68 50S ribosomal protein L20

6.3e-64

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A1S4E159 50S ribosomal protein L20

1.1e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDAASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1D684 50S ribosomal protein L20

1.3e-61

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVV PPKKD  S++V
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1FUI3 50S ribosomal protein L20

3.1e-63

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SMIV
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

A0A6J1JCG1 50S ribosomal protein L20

4.1e-63

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMIV
        ISRNAFPGNKNVVFPPKKDA SM+V
Subjt:  ISRNAFPGNKNVVFPPKKDAASMIV

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

4.7e-32

64.36

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  ++++RKVLS+I+  EP SFKALV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q11KK1 50S ribosomal protein L20

2.4e-28

56.07

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  AFPGNKN
        +    KN
Subjt:  AFPGNKN

Q2GHR2 50S ribosomal protein L20

1.4e-28

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   NV LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

2.8e-29

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L20

3.1e-28

56.44

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL   N+ LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

3.1e-55

83.06

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGLMKEN+QLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDAASMI
        +SR +FPGNKNVV   +K   S I
Subjt:  ISRNAFPGNKNVVFPPKKDAASMI

ATCG00660.1 ribosomal protein L20

5.2e-10

39.33

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Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSEISM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L++I++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSEISM

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAACTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAG
GGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGA
AGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAG
AATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

mRNA sequence

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GGAAATACCTAAATTCCTTCGTCTTTCCCTTACTCTCTCACGTGCTCCGCCTTCTTCTTCCACTTCTTCATTTCACTCCGTCTCCTGTACCCTTTCTACAGCTCAGCCTC
GCCGCCGCTTCTCTTCCGTTCAGTTCTACCGCCGCCTCTCTTTCGCCTAAACCTCCATCCTAGCAGTTTTAGATCATAGCAAGGAAGAAAGATGAACAAGGACAAGATAT
TTAAACTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAG
CGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAA
TAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCA
AGAAAGATGCTGCTTCCATGATTGTTTAATGGACCGTTTAAGAGTCCTCTGGACCTCCAGTTATATAGGAACCGACTCGGGGTGTTGTCTGGCTTATGATCATCGAGAGT
TGATGCTTGTTTTTAGCATAGTTCTTTTTGTTACTATTATCGTATTAATTCTCCTAATCTTGTCAGACACTGAAATGCTTCTCCATTTGAAATGATAAATTTTCTATTGG
ATGTTTTTTGGGTTTTAGATCCACAACCAAGGACGATATTTTGTTGCCACAAGTTTCTGCAGGATGTCCGGTCAATTTTTGTCATAGGACAGGGATGGAATTAACTTGTC
ACCAATTTTTGCAAGACTTTCAGTGAAATGTTAATCATTGTAGCACCGATCCATTTTATTGGAAAGCTGAAAATTGTGTGCAGCATATGTATGTATAATACAAACAATCC
AATAGTCAGATAACCATAATTCTAACCACTCTCTTTCAG

Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNK
NVVFPPKKDAASMIV

CSPI06G11030 (gene) of Cucumber (PI 183967) v1 genome