CuGenDBv2

Gene ID	CSPI06G11830
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	Chr6:10435752..10437194
RNA-Seq Expression	CSPI06G11830
Synteny	CSPI06G11830
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

KGN46888.2 hypothetical protein Csa_020864 [Cucumis sativus]

2.4e-83

100

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

XP_008465398.1 PREDICTED: uncharacterized protein LOC103503028 [Cucumis melo]

2.1e-79

96.15

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNP-SSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNP SSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNP-SSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        HPFAAETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

9.1e-75

91.03

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

9.1e-75

91.03

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

XP_031742644.1 uncharacterized protein LOC101220454 [Cucumis sativus]

3.8e-81

95.09

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PF--------AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        PF        AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  PF--------AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEN7 Uncharacterized protein

1.2e-83

100

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
        MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLH

Query:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  PFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

A0A1S3CNQ4 uncharacterized protein LOC103503028

1.0e-79

96.15

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNP-SSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENGKPITTMCAV+AMDYTNFCYRVCSICERTLPVNP SSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDK+VQTVICFDRVA+VLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNP-SSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        HPFAAETVSEIL GEM RITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

4.4e-75

91.03

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

4.4e-75

91.03

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN KPITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

4.9e-74

90.38

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Query:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MEN K ITTMCAV+AMD+T+FCYRVCSICERTLP NP  SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPS-SLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG
        HPFAAE VSEILEGEM R+TISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Subjt:  HPFAAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

2.2e-42

54.3

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Query:  TTMCAVMAMDYTNFCYRVCSICERTLPVN-----PSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF
        T +C ++A+D T++CYRVCS C+R LP +      SS CKFC        S   K ++R+LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P 
Subjt:  TTMCAVMAMDYTNFCYRVCSICERTLPVN-----PSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF

Query:  AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLREL
        AA  V+++ +GEMLR+T+++P+N NAQH RV  +VPL S  QPAI+ LR++
Subjt:  AAETVSEILEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLREL

Sequences

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CDS sequence

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ATGGAAAATGGGAAGCCAATAACAACCATGTGCGCAGTGATGGCTATGGATTACACCAATTTCTGTTACAGAGTTTGTTCTATCTGTGAGAGAACACTTCCTGTTAACCC
ATCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTTAATCCCGGTTCTTCCTCCTCTAAACGCGTCTTCCGTCTTCTTATGTCAATTGCAACGGATAAGAAAGTACAAA
CTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTACATCCTTTTGCTGCTGAAACTGTAAGTGAAATT
CTGGAGGGAGAGATGCTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAATTGTTCCTCTGAGTTCATGTTTTCAACCAGCAAT
TATTAGACTGAGGGAATTGTATGGGTAA

mRNA sequence

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GTGTCCTTGTACTATGTTTAATTAACAAAAGCACCCCTAGCAGTATCGAAAATTTCGTCCTCTCGACCATTTCCCCAAACAGTGTGAAGAACAGTGTTGTATTTTTAGTT
TTCAGGAACAAAGCAGTTTCCTTTAGAGGAGTAATGGAAAATGGGAAGCCAATAACAACCATGTGCGCAGTGATGGCTATGGATTACACCAATTTCTGTTACAGAGTTTG
TTCTATCTGTGAGAGAACACTTCCTGTTAACCCATCTTCTCTTTGCAAATTCTGCAACTTCAACGCCTTTAATCCCGGTTCTTCCTCCTCTAAACGCGTCTTCCGTCTTC
TTATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTTGCTAAGCTA
CATCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTGGAGGGAGAGATGCTTAGAATCACAATATCTAAACCAAAGAATGGCAATGCACAACACTCAAGAGTTGTCCAAAT
TGTTCCTCTGAGTTCATGTTTTCAACCAGCAATTATTAGACTGAGGGAATTGTATGGGTAAAAAGCTGCTGTTAATTTTGGTTTGTAATTAGTAATTACTTCTTATTATG
CATTTTCCCACATGCCTTTTCTCTTTGTTGACAAACTATCATTTGTGGATTGGGTTATTAGATGGGTTCCAACTATCATCTAGATTTGGGTTTTTAGATAATATGATTTT
CTATCTTAAAACCAATTCACAATGAGAAGAGTAACTTATCTTAAAACCAATTCACAATAAGAAGAGTAACTCACCCTGATTTTT

Protein sequence

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MENGKPITTMCAVMAMDYTNFCYRVCSICERTLPVNPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAETVSEI
LEGEMLRITISKPKNGNAQHSRVVQIVPLSSCFQPAIIRLRELYG

CSPI06G11830 (gene) of Cucumber (PI 183967) v1 genome