; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G11980 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G11980
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSerine/arginine repetitive matrix protein 1-like
Genome locationChr6:10530218..10531370
RNA-Seq ExpressionCSPI06G11980
SyntenyCSPI06G11980
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037301.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa]1.3e-10689.78Show/hide
Query:  MSTLHRSPPSSASPE------TLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFA
        MST HRS PS+ASPE      TLTQ NNQ DQLHF DEDEINLL SYLQISRSENPTKNSLPTLDS AFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFA
Subjt:  MSTLHRSPPSSASPE------TLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNE
        RTKSFIKTPHQRQILDLGRSIWGKSPTP+TRKPQVISPSR+LSRRIKQRS TRKEGVGVD+DLKNFPVLVAEFS+QFPGNGVWR+GLRRM EKNLKDMNE
Subjt:  RTKSFIKTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNE

Query:  KWVLLHIEGAELKARRAALLKEQLR
        KWVLLHIEGAELKARRAALLK+QL+
Subjt:  KWVLLHIEGAELKARRAALLKEQLR

KAE8637412.1 hypothetical protein CSA_023389, partial [Cucumis sativus]2.0e-3083.33Show/hide
Query:  RSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQLRTTETNED
        R + +  GV VDVDLKNFPVL+AE SRQF GNGVWRDGLRRM EKNLKDMNEKWVLLHIEGAELKAR+ ALLK+QLRTTETNED
Subjt:  RSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQLRTTETNED

KAG6570827.1 hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia]6.2e-7267.57Show/hide
Query:  MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFI
        MST HR PPS+ASPETLT         HF++EDE+NLLN YLQI+RS NPT NS PTLDS A DR++TA+ PKF++S IADKLHRLKL YHK ARTKS I
Subjt:  MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFI

Query:  KTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLH
        KTPH R+IL++GRSIWGK PT  T KPQ I   R + RRIKQRS + K+G    VDL +FPVL++EFSR+FPGNGVW++GLR M EK+L+DMNEKWVLLH
Subjt:  KTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLH

Query:  IEGAELKARRAALLKEQLRTTE
        IE AELKARRAALL++QLR  +
Subjt:  IEGAELKARRAALLKEQLRTTE

KAG6606028.1 hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia]3.5e-6763.36Show/hide
Query:  MSTLHRSPPSS-------ASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKF
        MST  RSPPS+       A+PE LTQS     Q+HF DEDE++LLN YL+++ S    KNS PTLDS A DR+ TA+G KF HS IADKLHRLK+ YHKF
Subjt:  MSTLHRSPPSS-------ASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKF

Query:  ARTKSFIKTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMN
        ARTKSFIKTPH  +IL++GRSIWGK   P T KPQVI      SRRI+ RS+ +K+G    VDLKNFPVLV+EFSRQFPGNGVWR+GL+ M E +LK MN
Subjt:  ARTKSFIKTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMN

Query:  EKWVLLHIEGAELKARRAALLKEQLRTTETNE
        EKWVLLHIE AELKARR AL++ Q+ TT+T +
Subjt:  EKWVLLHIEGAELKARRAALLKEQLRTTETNE

KGN46890.1 hypothetical protein Csa_020607 [Cucumis sativus]4.5e-123100Show/hide
Query:  MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFI
        MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFI
Subjt:  MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFI

Query:  KTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLH
        KTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLH
Subjt:  KTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLH

Query:  IEGAELKARRAALLKEQLRTTETNEDVN
        IEGAELKARRAALLKEQLRTTETNEDVN
Subjt:  IEGAELKARRAALLKEQLRTTETNEDVN

TrEMBL top hitse value%identityAlignment
A0A0A0KAX7 Uncharacterized protein2.2e-123100Show/hide
Query:  MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFI
        MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFI
Subjt:  MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFI

Query:  KTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLH
        KTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLH
Subjt:  KTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLH

Query:  IEGAELKARRAALLKEQLRTTETNEDVN
        IEGAELKARRAALLKEQLRTTETNEDVN
Subjt:  IEGAELKARRAALLKEQLRTTETNEDVN

A0A0A0LBY9 Uncharacterized protein6.1e-3392.31Show/hide
Query:  VGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQLRTTETNEDVN
        V VDVDLKNFPVL+AEFSRQFPGNGVWRDGLRRM EKNLKDMNEKWVLLHIEGAELKAR+ ALLK+QLRTTETNEDVN
Subjt:  VGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQLRTTETNEDVN

A0A5A7T6T1 Serine/arginine repetitive matrix protein 1-like6.4e-10789.78Show/hide
Query:  MSTLHRSPPSSASPE------TLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFA
        MST HRS PS+ASPE      TLTQ NNQ DQLHF DEDEINLL SYLQISRSENPTKNSLPTLDS AFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFA
Subjt:  MSTLHRSPPSSASPE------TLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNE
        RTKSFIKTPHQRQILDLGRSIWGKSPTP+TRKPQVISPSR+LSRRIKQRS TRKEGVGVD+DLKNFPVLVAEFS+QFPGNGVWR+GLRRM EKNLKDMNE
Subjt:  RTKSFIKTPHQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNE

Query:  KWVLLHIEGAELKARRAALLKEQLR
        KWVLLHIEGAELKARRAALLK+QL+
Subjt:  KWVLLHIEGAELKARRAALLKEQLR

A0A5J5C8J5 Uncharacterized protein2.2e-3041.59Show/hide
Query:  LHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTP
        LH+SP +S   +T+T   +Q  +L F +EDEI LL ++L+ ++S   TK+S   L S         +G +FS S I DKL RL+  YHK ARTKSFIKTP
Subjt:  LHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTP

Query:  HQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEG
        H RQI ++   IWGK  T  +      SP R      +      + G   +V L+NFPVL  E  R FP N V+R+GL+ +    L+ +NEKW+   +E 
Subjt:  HQRQILDLGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEG

Query:  AELKARRAALLKEQ
        A L A+RA L  EQ
Subjt:  AELKARRAALLKEQ

V4RSW9 Uncharacterized protein1.4e-2937.56Show/hide
Query:  FNDEDEINLLNSYLQI-----SRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRSIWGKSPTPV
        F D DEI LL  + ++     S S + T NS  TLDS +F+R+ +++G KF+H+ I DK+ RL++ YHK AR+KS IKTPH + +  + + IWGK  T  
Subjt:  FNDEDEINLLNSYLQI-----SRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRSIWGKSPTPV

Query:  TRKPQVISPSRLL---SRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQ
         ++ + +  S          +Q++   +E      +L  +PVL  E S+  P N VWR+ L+ +    LK+MN+KW+L+ IE A++ +++A L+KEQ
Subjt:  TRKPQVISPSRLL---SRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACGCTCCACCGGTCACCGCCGTCCAGCGCCTCTCCCGAAACCCTAACCCAATCCAACAACCAAATCGATCAACTTCATTTCAACGACGAAGATGAAATCAATCT
CCTGAATTCCTACCTCCAAATCTCCAGATCCGAAAACCCCACCAAGAATTCTCTCCCCACTCTCGATTCTCAGGCCTTCGACCGCCTTCAGACCGCCGTCGGCCCCAAAT
TCTCCCACTCCGTCATCGCCGATAAGCTCCACCGACTCAAACTCCTGTACCACAAATTCGCAAGAACAAAGTCCTTCATCAAAACTCCTCACCAACGTCAGATCCTCGAC
CTCGGCCGCAGCATCTGGGGAAAATCCCCCACACCTGTAACAAGAAAACCACAGGTAATTTCACCTTCAAGGTTACTTTCACGAAGAATCAAACAAAGATCAATCACTAG
AAAAGAAGGGGTTGGGGTTGATGTTGATCTGAAGAACTTTCCTGTTCTTGTGGCTGAATTTTCTCGGCAGTTTCCGGGGAATGGGGTGTGGAGAGATGGGCTGAGGAGAA
TGAATGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAGGCAAGAAGGGCTGCTTTATTGAAGGAGCAACTTAGAACT
ACAGAAACTAATGAAGATGTGAATTAG
mRNA sequenceShow/hide mRNA sequence
GCTTCTTATCATTCAAGTTATAAAATTGTTTGGGTATAATAACTTTTGATTCTCTCCCCTCGTATTTATTAAAATGATAAACAAAAATAAAAAGGGGATTGGAGCGGGAA
ATTTTGTTGGCCATAACATTGACCGGCTCACCAAATTTATGACTAAAGAAACCTTTACCAGTCATTGACACTCTCGCCAAAACCAAACCCCCACCGAAACTCCGATCTAT
ATCGTCCAAATTCCCATCATGTCAACGCTCCACCGGTCACCGCCGTCCAGCGCCTCTCCCGAAACCCTAACCCAATCCAACAACCAAATCGATCAACTTCATTTCAACGA
CGAAGATGAAATCAATCTCCTGAATTCCTACCTCCAAATCTCCAGATCCGAAAACCCCACCAAGAATTCTCTCCCCACTCTCGATTCTCAGGCCTTCGACCGCCTTCAGA
CCGCCGTCGGCCCCAAATTCTCCCACTCCGTCATCGCCGATAAGCTCCACCGACTCAAACTCCTGTACCACAAATTCGCAAGAACAAAGTCCTTCATCAAAACTCCTCAC
CAACGTCAGATCCTCGACCTCGGCCGCAGCATCTGGGGAAAATCCCCCACACCTGTAACAAGAAAACCACAGGTAATTTCACCTTCAAGGTTACTTTCACGAAGAATCAA
ACAAAGATCAATCACTAGAAAAGAAGGGGTTGGGGTTGATGTTGATCTGAAGAACTTTCCTGTTCTTGTGGCTGAATTTTCTCGGCAGTTTCCGGGGAATGGGGTGTGGA
GAGATGGGCTGAGGAGAATGAATGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAGGCAAGAAGGGCTGCTTTATTG
AAGGAGCAACTTAGAACTACAGAAACTAATGAAGATGTGAATTAGAATTAATTTATGATTTGTACAATAGATAGTTACAGACAGAGAGCATTTTGTTATTGTCAATGTTG
TTGAGTTGTTCCTTGTATTTTCTAATGGCAGAACTTAGATTAGGAGCACTTGTATTGTATGATTGTATTGTTATTAAATCAGCATGGTGAAGATTTGCTGATCATTTAAG
TTTGAGATTATTTTTGTTTTTTTTTCTAAGGCTCTAAACAAAACAGAAAACAG
Protein sequenceShow/hide protein sequence
MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDSQAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILD
LGRSIWGKSPTPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDGLRRMNEKNLKDMNEKWVLLHIEGAELKARRAALLKEQLRT
TETNEDVN