; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G12340 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G12340
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionXS domain-containing protein
Genome locationChr6:10803828..10805471
RNA-Seq ExpressionCSPI06G12340
SyntenyCSPI06G12340
Gene Ontology termsGO:0031047 - gene silencing by RNA (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005380 - XS domain
IPR038588 - XS domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458617.1 PREDICTED: uncharacterized protein LOC103497964 [Cucumis melo]5.0e-9985.52Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA
        SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE AP+GLWVR ILP  EVLALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA 
Subjt:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA

Query:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETK
        +R MGCGGK KVVRG+  NQSIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+ SNVD+HKATGANTLESVLY YLGL  DL KLDFETK
Subjt:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETK

Query:  KRSVVRSKKEIQAIVHASLQC
        KRSVV+SKKEIQAIV+ASLQC
Subjt:  KRSVVRSKKEIQAIVHASLQC

XP_011657058.1 uncharacterized protein LOC105435801 [Cucumis sativus]1.5e-13598.03Show/hide
Query:  MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDL
        MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAP+GLWVRMILPPVEVLALKEDL
Subjt:  MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDL

Query:  IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNV
        IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLV SNV
Subjt:  IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNV

Query:  DMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
        DMHKATGANTLESV Y YLGLV DLDKLDFETKKRSVVRSKKEIQAIVHASLQC
Subjt:  DMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

XP_022140332.1 uncharacterized protein LOC111011032 [Momordica charantia]2.3e-6774.46Show/hide
Query:  MGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEA
        MGWSSE+AP+GLWV+ ILP VE  ALKEDLIIWP VLIIHNSSIA D   E V ISCE+LE  +R MG GGK KVVRGK  NQSIMVVTF AMF GLQEA
Subjt:  MGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEA

Query:  ERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
        ERLH NFADKSHGRDEFH+IN    + S+ D+HKA GAN +ESVLY YLGL  D +KLDFETKKRSVV+SKKEIQAIV A+LQC
Subjt:  ERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

XP_031270605.1 uncharacterized protein LOC116129008 [Pistacia vera]8.4e-5455.45Show/hide
Query:  KSKEFVDALSLPQHA--SRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEA
        KSK+FVDALSL QHA  S+T  G RAEHLG H+ALC LMGW++   P+GLWV  +LP  E LALK+DLIIWP V+ +HNSSIA     E +  + E+LE+
Subjt:  KSKEFVDALSLPQHA--SRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEA

Query:  AVRAMGCG-GKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFE
         +R MG G G  KV RG+A NQS MVV F   F GLQEAE+LH  FADK  GR EF  I  +  + S+    K   A+ +E+VLY YLG+  DLDKLDFE
Subjt:  AVRAMGCG-GKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFE

Query:  TKKRSVVRSKKEIQAIVHAS
         K+R  V+SKK+I  I H S
Subjt:  TKKRSVVRSKKEIQAIVHAS

XP_038900433.1 uncharacterized protein LOC120087658 [Benincasa hispida]2.5e-9079.19Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA
        SKSKEF DALSL QHAS+TLEGSRAEHLGL KALCWLMGWSSE AP G WVR ILP  EVLALKEDLIIWP VLIIHNSSIAID   E VAISCE+LE  
Subjt:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA

Query:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETK
        +R MGCGGK KVVRGK  NQSIM+VTF AMF GLQEAERLH +FADKSHGRDEF KI    L+ S+ D+HKATGANTL++VLY YLGL  DLDKLDFETK
Subjt:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETK

Query:  KRSVVRSKKEIQAIVHASLQC
        KRSVV+SKKEIQAIV+ASL C
Subjt:  KRSVVRSKKEIQAIVHASLQC

TrEMBL top hitse value%identityAlignment
A0A0A0KGN5 XS domain-containing protein7.3e-13698.03Show/hide
Query:  MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDL
        MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAP+GLWVRMILPPVEVLALKEDL
Subjt:  MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDL

Query:  IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNV
        IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLV SNV
Subjt:  IIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNV

Query:  DMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
        DMHKATGANTLESV Y YLGLV DLDKLDFETKKRSVVRSKKEIQAIVHASLQC
Subjt:  DMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

A0A1S3C894 uncharacterized protein LOC1034979642.4e-9985.52Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA
        SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE AP+GLWVR ILP  EVLALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA 
Subjt:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA

Query:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETK
        +R MGCGGK KVVRG+  NQSIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+ SNVD+HKATGANTLESVLY YLGL  DL KLDFETK
Subjt:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETK

Query:  KRSVVRSKKEIQAIVHASLQC
        KRSVV+SKKEIQAIV+ASLQC
Subjt:  KRSVVRSKKEIQAIVHASLQC

A0A3N7GBX5 XS domain-containing protein4.5e-5355.66Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGS-RAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEA
        S SK+FVD LSL QH   + +GS RAEHLGLHKALC LMGW+S   P+  WVR ILP VE  +LKEDLIIWP V++IHN SIA D   E + +S E L  
Subjt:  SKSKEFVDALSLPQHASRTLEGS-RAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEA

Query:  AVRAMGCG-GKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFE
         +R MG G G   + RGKA NQS MVV FG  F GLQ AERLH  +A+   GR EF +I L    H ++   +   +NT E+VLY YLG+  DLDKLDFE
Subjt:  AVRAMGCG-GKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFE

Query:  TKKRSVVRSKKEIQAIVHASL
         KKR VV+SKKEI+A+   +L
Subjt:  TKKRSVVRSKKEIQAIVHASL

A0A5A7SQC0 XS domain-containing protein2.4e-9985.52Show/hide
Query:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA
        SKSKEFVDALSL QHASRTLEGSRAEHLGLHKALCWLMGWSSE AP+GLWVR ILP  EVLALKEDLIIWP VLIIHNSSIAIDK  +GVAISCE+LEA 
Subjt:  SKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAA

Query:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETK
        +R MGCGGK KVVRG+  NQSIMVVTFGAMF GLQEAERLH +FADKSHGRDE HKINLR L+ SNVD+HKATGANTLESVLY YLGL  DL KLDFETK
Subjt:  VRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETK

Query:  KRSVVRSKKEIQAIVHASLQC
        KRSVV+SKKEIQAIV+ASLQC
Subjt:  KRSVVRSKKEIQAIVHASLQC

A0A6J1CGJ5 uncharacterized protein LOC1110110321.1e-6774.46Show/hide
Query:  MGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEA
        MGWSSE+AP+GLWV+ ILP VE  ALKEDLIIWP VLIIHNSSIA D   E V ISCE+LE  +R MG GGK KVVRGK  NQSIMVVTF AMF GLQEA
Subjt:  MGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEA

Query:  ERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC
        ERLH NFADKSHGRDEFH+IN    + S+ D+HKA GAN +ESVLY YLGL  D +KLDFETKKRSVV+SKKEIQAIV A+LQC
Subjt:  ERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLGLVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G22430.1 CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380)1.3e-2031.8Show/hide
Query:  SKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAV
        SK+  D  SL  H   + +  SR  HLGLHKALC LMGW+   AP        LP  E    +  LIIWP  +I+ N+S    K         + ++  +
Subjt:  SKEFVDALSLPQHASRTLE-GSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIHNSSIAIDKRYEGVAISCEKLEAAV

Query:  RAMG-CGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSN------VDMHKATGANTLESVLYDYLGLVGDLDK
        R +G  GGK K + G+  +  I +  F     GL++A R+   F   + GR  + ++        +      V++   TG    + + Y YL  V DLDK
Subjt:  RAMG-CGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSN------VDMHKATGANTLESVLYDYLGLVGDLDK

Query:  LDFETKKRSVVRSKKEI
        +D ETKK++ + S +E+
Subjt:  LDFETKKRSVVRSKKEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGCCATTTATTTTGGCAAAGCCTCTTTATCTTGGTGCACATGTTTCAGGTTTCTGTATATATATTGCTTGCTAAATTTACTCGCATTTTTATCAGCAAGTCCAA
GGAGTTTGTAGATGCACTAAGCTTACCACAACATGCCTCCCGGACGCTGGAAGGATCTAGGGCAGAACACTTGGGTCTTCATAAAGCACTTTGTTGGCTCATGGGATGGA
GCAGTGAAATAGCGCCAAGTGGTCTATGGGTACGAATGATATTACCTCCTGTAGAAGTACTTGCTTTGAAGGAGGATCTCATTATATGGCCCTCCGTTCTTATCATTCAT
AATAGTTCTATTGCAATTGATAAACGATATGAAGGGGTAGCCATAAGCTGTGAGAAGCTTGAGGCTGCTGTAAGAGCAATGGGTTGTGGAGGGAAGTTCAAAGTGGTACG
TGGTAAAGCTGTAAACCAGAGTATTATGGTTGTAACTTTTGGTGCGATGTTTTATGGGTTGCAAGAAGCAGAAAGACTACACAACAACTTTGCAGATAAGAGTCACGGCA
GGGACGAGTTCCATAAAATCAATTTGAGATGTCTCGTTCACAGCAACGTGGATATGCATAAAGCAACAGGAGCAAACACATTGGAGAGTGTACTTTATGACTACTTAGGC
CTCGTCGGGGACTTGGATAAACTCGACTTTGAGACCAAGAAGAGATCTGTGGTGAGAAGCAAGAAAGAAATCCAAGCCATTGTGCATGCATCTCTTCAGTGT
mRNA sequenceShow/hide mRNA sequence
ATGGATTGCCATTTATTTTGGCAAAGCCTCTTTATCTTGGTGCACATGTTTCAGGTTTCTGTATATATATTGCTTGCTAAATTTACTCGCATTTTTATCAGCAAGTCCAA
GGAGTTTGTAGATGCACTAAGCTTACCACAACATGCCTCCCGGACGCTGGAAGGATCTAGGGCAGAACACTTGGGTCTTCATAAAGCACTTTGTTGGCTCATGGGATGGA
GCAGTGAAATAGCGCCAAGTGGTCTATGGGTACGAATGATATTACCTCCTGTAGAAGTACTTGCTTTGAAGGAGGATCTCATTATATGGCCCTCCGTTCTTATCATTCAT
AATAGTTCTATTGCAATTGATAAACGATATGAAGGGGTAGCCATAAGCTGTGAGAAGCTTGAGGCTGCTGTAAGAGCAATGGGTTGTGGAGGGAAGTTCAAAGTGGTACG
TGGTAAAGCTGTAAACCAGAGTATTATGGTTGTAACTTTTGGTGCGATGTTTTATGGGTTGCAAGAAGCAGAAAGACTACACAACAACTTTGCAGATAAGAGTCACGGCA
GGGACGAGTTCCATAAAATCAATTTGAGATGTCTCGTTCACAGCAACGTGGATATGCATAAAGCAACAGGAGCAAACACATTGGAGAGTGTACTTTATGACTACTTAGGC
CTCGTCGGGGACTTGGATAAACTCGACTTTGAGACCAAGAAGAGATCTGTGGTGAGAAGCAAGAAAGAAATCCAAGCCATTGTGCATGCATCTCTTCAGTGT
Protein sequenceShow/hide protein sequence
MDCHLFWQSLFILVHMFQVSVYILLAKFTRIFISKSKEFVDALSLPQHASRTLEGSRAEHLGLHKALCWLMGWSSEIAPSGLWVRMILPPVEVLALKEDLIIWPSVLIIH
NSSIAIDKRYEGVAISCEKLEAAVRAMGCGGKFKVVRGKAVNQSIMVVTFGAMFYGLQEAERLHNNFADKSHGRDEFHKINLRCLVHSNVDMHKATGANTLESVLYDYLG
LVGDLDKLDFETKKRSVVRSKKEIQAIVHASLQC