; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G12420 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G12420
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S acidic ribosomal protein family
Genome locationChr6:10856889..10858028
RNA-Seq ExpressionCSPI06G12420
SyntenyCSPI06G12420
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4186.09Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVGAE+DE+RI  LL++VKGKDITELIASGREKLASVPSGGGA+ ++A AGGA GGGAA A AEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_004145795.1 60S acidic ribosomal protein P2B [Cucumis sativus]6.4e-49100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_008458601.1 PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis melo]1.1e-4593.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EIDEERITLLL+EVKGKD+TELIASGREKLASVPSGGGAIAVSA+AGGA GGGAA APAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_023512871.1 60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]4.4e-4286.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVGAE+DE+RI  LL++VKGKDITELIASGREKLASVPSGGGA+ ++A AGGA GGGAAAA AEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_038901119.1 60S acidic ribosomal protein P2B-like [Benincasa hispida]1.2e-4289.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGN SPG DDVKSILNSVGAE+D++RI LLL++VKGKDITELIASGREKLASVPSGGGAIAVSA AGGA GGGAA A AEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0KGP6 Uncharacterized protein3.1e-49100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A1S3C8T5 60S acidic ribosomal protein P2B-like5.4e-4693.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EIDEERITLLL+EVKGKD+TELIASGREKLASVPSGGGAIAVSA+AGGA GGGAA APAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A5A7SR49 60S acidic ribosomal protein P2B-like5.4e-4693.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EIDEERITLLL+EVKGKD+TELIASGREKLASVPSGGGAIAVSA+AGGA GGGAA APAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1DJB9 60S acidic ribosomal protein P2B-like1.1e-4185.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGADDVK+ILNSVG E+DE+RI  LL++VKGKDITELIASGREKLASVPSGGGA+AV+A AGGA GGGAA A AE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like2.4e-4185.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVGAE+DE+RI  LL++VKGKDITELIASGREKLASVPSGGGA+ ++A AGGA GGGAA A  EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B4.2e-3574.78Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKV+AAYLLAVLGGNTSP ADDVKSIL SVGAE DEE++  LL E+K KDITE+IA+GRE+L+SVPSGGGAI + A A  A  GG AA   E KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESD+DMGFSLFD
Subjt:  EKEESDDDMGFSLFD

P41099 60S acidic ribosomal protein P21.3e-3170.43Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKV+AA+LLA+LGGNTSP  +D+KSIL SVGA+ D+++I LLL++VKGKDITELIASGRE+LASVPSGGG +AV+AAAGG  G   AAA  E KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
          EESD+++GFSLFD
Subjt:  EKEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A3.9e-3371.3Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MK VAAYLLAVL GN SP ADD+ +IL SVG E+D E++ LLL+++ GKDITELIA+GREK ASVP GGG +AV+AAA  A   G AA  AE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

Q9LXM8 60S acidic ribosomal protein P2-41.9e-3273.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKV AA+LLAVLGGN +P AD++K I+ +VGA++D E I LLL EV GKDI ELIASGREKLASVPSGGG +AVSAA   ++GGG AAAPAE KKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-29.6e-3270.69Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPS-GGGAIAVSAAAGGATGGGAAAAPAEQKKEEKV
        MKVVAAYLLAVL G  SP + D+K+IL SVGAE ++ +I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++A  G  GGG A+A AE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPS-GGGAIAVSAAAGGATGGGAAAAPAEQKKEEKV

Query:  EEKEESDDDMGFSLFD
        EEKEESDDDMGFSLF+
Subjt:  EEKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family6.8e-3370.69Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPS-GGGAIAVSAAAGGATGGGAAAAPAEQKKEEKV
        MKVVAAYLLAVL G  SP + D+K+IL SVGAE ++ +I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++A  G  GGG A+A AE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPS-GGGAIAVSAAAGGATGGGAAAAPAEQKKEEKV

Query:  EEKEESDDDMGFSLFD
        EEKEESDDDMGFSLF+
Subjt:  EEKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family6.8e-3370.69Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPS-GGGAIAVSAAAGGATGGGAAAAPAEQKKEEKV
        MKVVAAYLLAVL G  SP + D+K+IL SVGAE ++ +I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++A  G  GGG A+A AE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPS-GGGAIAVSAAAGGATGGGAAAAPAEQKKEEKV

Query:  EEKEESDDDMGFSLFD
        EEKEESDDDMGFSLF+
Subjt:  EEKEESDDDMGFSLFD

AT2G27710.3 60S acidic ribosomal protein family6.8e-3370.69Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPS-GGGAIAVSAAAGGATGGGAAAAPAEQKKEEKV
        MKVVAAYLLAVL G  SP + D+K+IL SVGAE ++ +I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++A  G  GGG A+A AE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPS-GGGAIAVSAAAGGATGGGAAAAPAEQKKEEKV

Query:  EEKEESDDDMGFSLFD
        EEKEESDDDMGFSLF+
Subjt:  EEKEESDDDMGFSLFD

AT3G44590.1 60S acidic ribosomal protein family1.4e-3373.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKV AA+LLAVLGGN +P AD++K I+ +VGA++D E I LLL EV GKDI ELIASGREKLASVPSGGG +AVSAA   ++GGG AAAPAE KKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT3G44590.2 60S acidic ribosomal protein family1.4e-3373.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE
        MKV AA+LLAVLGGN +P AD++K I+ +VGA++D E I LLL EV GKDI ELIASGREKLASVPSGGG +AVSAA   ++GGG AAAPAE KKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAGCCCCGGAGCCGATGATGTGAAGTCTATTCTTAATTCAGTTGGGGCTGAGATAGATGAAGA
GAGGATCACCTTGCTCTTAGCGGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCATCAGTGCCGTCTGGTGGCGGTGCAATCGCCG
TCTCCGCCGCTGCTGGCGGTGCCACTGGTGGTGGTGCAGCAGCAGCCCCAGCCGAGCAGAAGAAAGAAGAGAAGGTCGAGGAGAAAGAAGAATCAGACGATGATATGGGT
TTCAGCCTCTTTGACTAA
mRNA sequenceShow/hide mRNA sequence
CGGCTCCGATCTCTCTCACTCTTCATTGCGGCTTCTGTTCCGAACTTTCTCAAAAATGAAGGTGGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAGCCCCG
GAGCCGATGATGTGAAGTCTATTCTTAATTCAGTTGGGGCTGAGATAGATGAAGAGAGGATCACCTTGCTCTTAGCGGAAGTGAAAGGAAAGGATATCACAGAGTTGATA
GCCTCCGGACGGGAGAAGTTGGCATCAGTGCCGTCTGGTGGCGGTGCAATCGCCGTCTCCGCCGCTGCTGGCGGTGCCACTGGTGGTGGTGCAGCAGCAGCCCCAGCCGA
GCAGAAGAAAGAAGAGAAGGTCGAGGAGAAAGAAGAATCAGACGATGATATGGGTTTCAGCCTCTTTGACTAAGCAACTTATTTGGTGTCGTTATCAGTTAGTTTTTTTA
GTTGATTTTCGTTCAAGTTTCCGGGCTTTGGTAGCTTGGTAGGGGTTTTCCTTTTTGACTTGTTTTGGAACTCAAAAATTTTGATAGATGAAAGTTCATTTGTTCAACTT
CAATATTTCAGTAATTATTGTCATTTGACTACCTGTGTGATTTATAATCTCCACTGTTTCTTATCTCCTTGTTCATGATTTTTCTTGGCTTATGCTAATTTGCATCACTG
AT
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGREKLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVEEKEESDDDMG
FSLFD