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CSPI06G12940 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G12940
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr6:11369697..11369990
RNA-Seq ExpressionCSPI06G12940
SyntenyCSPI06G12940
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025975.1 uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa]4.4e-1953.68Show/hide
Query:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD
        W  HA RVG   +++ ++FRK L++ FYP SF D+KR KF++ L G+M V EYEK FT+LAKY L FV+DE+DK KQF E L+I+I+  IT S++
Subjt:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD

KAA0026088.1 uncharacterized protein E6C27_scaffold19G00210 [Cucumis melo var. makuwa]2.1e-1657.32Show/hide
Query:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDL
        W L+  RVG+  F+  + FRK  K+ FYP SF D KR +F+NL  G+M  A+YEKRFT+L KY LAFV+DE DKFK FEE L
Subjt:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDL

KAE8646924.1 hypothetical protein Csa_020876 [Cucumis sativus]2.5e-46100Show/hide
Query:  MVGWNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINLHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITT
        MVGWNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINLHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITT
Subjt:  MVGWNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINLHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITT

TYK04211.1 uncharacterized protein E5676_scaffold24967G00130 [Cucumis melo var. makuwa]2.2e-1851.58Show/hide
Query:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD
        W  H  RVG   +++ ++FRK L++ FYP SF D+KR KF++ L G+M V EYEK FT+LAKY + FV+DE+DK KQF E L+I+I+  IT S++
Subjt:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD

TYK04983.1 uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]5.8e-1956.99Show/hide
Query:  LHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD
        L A + G EG +  ++FRK  K+ FYPHSF D KR+K +NL  G + VA YEK+FT+LAKY LAFVVDE DK K+FEE L+ +I   +TTSMD
Subjt:  LHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD

TrEMBL top hitse value%identityAlignment
A0A5A7SIT3 Retrotrans_gag domain-containing protein1.0e-1657.32Show/hide
Query:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDL
        W L+  RVG+  F+  + FRK  K+ FYP SF D KR +F+NL  G+M  A+YEKRFT+L KY LAFV+DE DKFK FEE L
Subjt:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDL

A0A5A7SND8 Retrotrans_gag domain-containing protein2.1e-1953.68Show/hide
Query:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD
        W  HA RVG   +++ ++FRK L++ FYP SF D+KR KF++ L G+M V EYEK FT+LAKY L FV+DE+DK KQF E L+I+I+  IT S++
Subjt:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD

A0A5D3BWX9 Retrotrans_gag domain-containing protein1.1e-1851.58Show/hide
Query:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD
        W  H  RVG   +++ ++FRK L++ FYP SF D+KR KF++ L G+M V EYEK FT+LAKY + FV+DE+DK KQF E L+I+I+  IT S++
Subjt:  WNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD

A0A5D3BZ05 Retrotrans_gag domain-containing protein2.8e-1956.99Show/hide
Query:  LHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD
        L A + G EG +  ++FRK  K+ FYPHSF D KR+K +NL  G + VA YEK+FT+LAKY LAFVVDE DK K+FEE L+ +I   +TTSMD
Subjt:  LHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINL-HGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD

A0A5D3DE46 Retrotrans_gag domain-containing protein1.7e-1651.69Show/hide
Query:  RVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD
        R  +  F+  ++F+K  +N FYP SF D KR KF++ + GN+ VA+YEKRFT+L KY LAFV+DE  K K FE  LK KI  S+T +MD
Subjt:  RVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFIN-LHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGGTGGAATCTTCACGCGACTAGGGTAGGCAAAGAAGGCTTCATCGTATGCGATGATTTTCGAAAGACTTTAAAAAATAACTTTTACCCTCATTCTTTCTATGA
CAAGAAGAGAAGCAAGTTCATAAATTTGCATGGCAACATGGCTGTCGCAGAGTATGAGAAACGATTTACTAAGTTGGCCAAGTATGTCTTAGCCTTTGTAGTCGATGAGA
TGGACAAGTTCAAGCAGTTTGAAGAAGACTTGAAGATCAAAATTAAGATGTCGATCACAACCAGTATGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGGTGGAATCTTCACGCGACTAGGGTAGGCAAAGAAGGCTTCATCGTATGCGATGATTTTCGAAAGACTTTAAAAAATAACTTTTACCCTCATTCTTTCTATGA
CAAGAAGAGAAGCAAGTTCATAAATTTGCATGGCAACATGGCTGTCGCAGAGTATGAGAAACGATTTACTAAGTTGGCCAAGTATGTCTTAGCCTTTGTAGTCGATGAGA
TGGACAAGTTCAAGCAGTTTGAAGAAGACTTGAAGATCAAAATTAAGATGTCGATCACAACCAGTATGGATTAG
Protein sequenceShow/hide protein sequence
MVGWNLHATRVGKEGFIVCDDFRKTLKNNFYPHSFYDKKRSKFINLHGNMAVAEYEKRFTKLAKYVLAFVVDEMDKFKQFEEDLKIKIKMSITTSMD