; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G12960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G12960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPol protein
Genome locationChr6:11411350..11412426
RNA-Seq ExpressionCSPI06G12960
SyntenyCSPI06G12960
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR016197 - Chromo-like domain superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO45752.1 pol protein [Cucumis melo subsp. melo]2.2e-17788.34Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F+VG+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLS VH+VFHVSMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAR VK LRN+ IPLVKVLWRNHR+EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

KAA0042119.1 pol protein [Cucumis melo var. makuwa]6.5e-17786.86Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFV GKSTYTASKWA+LY++EIVRLHGV VSIVSDRDARFTSKFWKGLQTAMGTRLDF+TAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYGKCCR+PVCW EVGE RLMGPEL++STNEAIQKIR+RMQTAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F+VG+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G+VAY LALPPSLS VH+VFHVSMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMSKVISRL
         EQ VE+LA+EVKMLRNR IPLVKVLWRNHR+EEATWERE++MSK  S L
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMSKVISRL

KAA0043401.1 pol protein [Cucumis melo var. makuwa]2.0e-17888.34Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F++G+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLSAVH+VFH+SMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

KAA0051368.1 pol protein [Cucumis melo var. makuwa]4.5e-17888.34Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F++G+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLS VH+VFHVSMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

KAA0064005.1 pol protein [Cucumis melo var. makuwa]2.2e-17788.34Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYG+CCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F++G+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLSAVH+VFHVSMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAREVK LRN+ IPLVKVLWRNHR EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

TrEMBL top hitse value%identityAlignment
A0A5A7TPA9 Pol protein9.8e-17988.34Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F++G+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLSAVH+VFH+SMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

A0A5A7U7V9 Reverse transcriptase2.2e-17888.34Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F++G+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLS VH+VFHVSMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

A0A5A7UAA8 Reverse transcriptase3.2e-17788.05Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ 
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYGKCCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F++ +KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLS VH+VFHVSMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

A0A5A7VDP3 Pol protein1.1e-17788.34Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGM PFEALYG+CCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F++G+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLSAVH+VFHVSMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAREVK LRN+ IPLVKVLWRNHR EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

Q84KB0 Pol protein1.1e-17788.34Show/hide
Query:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
        KWENVSMDFI+GLP+TL+GFTVI VVVDRLTKSAHFVPGKSTYTASKWA+LY++EIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT
Subjt:  KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQT

Query:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        DGQTERLNQVLEDMLRAC +EFPGSWDSHLHLMEFAYNNS+QATIGMAPFEALYG+CCR+PVCW EVGE RLMGPELV+STNEAIQKIR+RM TAQSRQK
Subjt:  DGQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY
        SYADVRRKDL+F+VG+KVFLKVAPMKGV+RFE++GKLSPRFVGPF ILER+G VAYRLALPPSLS VH+VFHVSMLRKYV + SHVVDYEPLEIDE+LSY
Subjt:  SYADVRRKDLKFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSY

Query:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM
        VEQPVE+LAR VK LRN+ IPLVKVLWRNHR+EEATWERE++M
Subjt:  VEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEM

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.5e-3831.02Show/hide
Query:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD
        WE++SMDFI+ LP++  G+  + VVVDR +K A  VP   + TA + A ++   ++   G P  I++D D  FTS+ WK         + FS  + PQTD
Subjt:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD

Query:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        GQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      +P+   E+        E  + T +  Q ++  + T   + K
Subjt:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID
         Y D++ +++ +F  G+ V +K     G +   K  KL+P F GPF +L++ G   Y L LP S+  +  + FHVS L KY  N+      +D   +   
Subjt:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID

Query:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW
         H+   +   ++L   VK + N +   +   W
Subjt:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW

P0CT35 Transposon Tf2-2 polyprotein2.5e-3831.02Show/hide
Query:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD
        WE++SMDFI+ LP++  G+  + VVVDR +K A  VP   + TA + A ++   ++   G P  I++D D  FTS+ WK         + FS  + PQTD
Subjt:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD

Query:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        GQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      +P+   E+        E  + T +  Q ++  + T   + K
Subjt:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID
         Y D++ +++ +F  G+ V +K     G +   K  KL+P F GPF +L++ G   Y L LP S+  +  + FHVS L KY  N+      +D   +   
Subjt:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID

Query:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW
         H+   +   ++L   VK + N +   +   W
Subjt:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW

P0CT36 Transposon Tf2-3 polyprotein2.5e-3831.02Show/hide
Query:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD
        WE++SMDFI+ LP++  G+  + VVVDR +K A  VP   + TA + A ++   ++   G P  I++D D  FTS+ WK         + FS  + PQTD
Subjt:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD

Query:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        GQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      +P+   E+        E  + T +  Q ++  + T   + K
Subjt:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID
         Y D++ +++ +F  G+ V +K     G +   K  KL+P F GPF +L++ G   Y L LP S+  +  + FHVS L KY  N+      +D   +   
Subjt:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID

Query:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW
         H+   +   ++L   VK + N +   +   W
Subjt:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW

P0CT41 Transposon Tf2-12 polyprotein2.5e-3831.02Show/hide
Query:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD
        WE++SMDFI+ LP++  G+  + VVVDR +K A  VP   + TA + A ++   ++   G P  I++D D  FTS+ WK         + FS  + PQTD
Subjt:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD

Query:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        GQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      +P+   E+        E  + T +  Q ++  + T   + K
Subjt:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID
         Y D++ +++ +F  G+ V +K     G +   K  KL+P F GPF +L++ G   Y L LP S+  +  + FHVS L KY  N+      +D   +   
Subjt:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID

Query:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW
         H+   +   ++L   VK + N +   +   W
Subjt:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW

Q9UR07 Transposon Tf2-11 polyprotein2.5e-3831.02Show/hide
Query:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD
        WE++SMDFI+ LP++  G+  + VVVDR +K A  VP   + TA + A ++   ++   G P  I++D D  FTS+ WK         + FS  + PQTD
Subjt:  WENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTD

Query:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK
        GQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++      +P+   E+        E  + T +  Q ++  + T   + K
Subjt:  GQTERLNQVLEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYG-KCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQK

Query:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID
         Y D++ +++ +F  G+ V +K     G +   K  KL+P F GPF +L++ G   Y L LP S+  +  + FHVS L KY  N+      +D   +   
Subjt:  SYADVRRKDL-KFDVGEKVFLKVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAV-HNVFHVSMLRKYVANTS---HVVDYEPLEID

Query:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW
         H+   +   ++L   VK + N +   +   W
Subjt:  EHLSYVEQPVEILAREVKMLRNRSIPLVKVLW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTGGGAGAATGTGTCGATGGATTTTATTTCAGGGCTGCCTAAGACCCTGAAGGGTTTCACAGTGATTTTGGTTGTCGTAGACAGGCTTACGAAATCGGCACATTTTGT
ACCAGGAAAATCCACTTATACTGCTAGTAAGTGGGCAGAGTTGTATTTAACTGAGATTGTGAGACTGCATGGAGTGCCTGTATCGATTGTTTCTGATAGGGATGCACGGT
TTACTTCCAAGTTTTGGAAGGGACTTCAGACTGCTATGGGTACGAGATTGGATTTCAGTACAGCCTTTCATCCACAGACTGATGGTCAAACTGAACGTTTGAACCAAGTT
TTAGAGGATATGCTACGAGCTTGTGTTATAGAGTTTCCAGGTAGTTGGGACTCTCATCTACATTTGATGGAGTTTGCTTATAACAACAGTTTCCAGGCTACCATCGGTAT
GGCACCATTTGAGGCTTTGTATGGCAAATGTTGTAGAACCCCTGTTTGTTGGAGTGAGGTTGGTGAACATAGATTGATGGGACCTGAATTAGTTCGGTCTACTAATGAGG
CTATTCAAAAGATTAGAGCACGTATGCAAACAGCGCAGAGTAGACAGAAGAGTTATGCAGATGTACGGCGAAAAGACCTTAAGTTCGATGTGGGAGAAAAGGTATTCTTG
AAGGTAGCACCTATGAAGGGTGTTATGCGTTTTGAGAAGAAAGGGAAGTTAAGTCCTCGTTTTGTTGGACCATTTGGGATCTTAGAGAGGGTTGGTGTTGTGGCGTATCG
CTTGGCATTACCACCATCACTCTCTGCAGTCCATAATGTTTTCCATGTTTCGATGTTGAGGAAGTATGTGGCCAATACATCTCATGTAGTAGACTACGAACCCTTGGAGA
TTGATGAGCATTTGAGCTATGTAGAACAACCTGTGGAGATTCTGGCTAGAGAGGTAAAGATGCTTCGTAATAGAAGCATTCCATTAGTAAAGGTTTTGTGGAGGAATCAT
CGAATTGAAGAGGCGACATGGGAGCGAGAAGAAGAGATGAGCAAAGTTATTTCAAGATTAAAACTTTCGAGGACGAAAGTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
AAGTGGGAGAATGTGTCGATGGATTTTATTTCAGGGCTGCCTAAGACCCTGAAGGGTTTCACAGTGATTTTGGTTGTCGTAGACAGGCTTACGAAATCGGCACATTTTGT
ACCAGGAAAATCCACTTATACTGCTAGTAAGTGGGCAGAGTTGTATTTAACTGAGATTGTGAGACTGCATGGAGTGCCTGTATCGATTGTTTCTGATAGGGATGCACGGT
TTACTTCCAAGTTTTGGAAGGGACTTCAGACTGCTATGGGTACGAGATTGGATTTCAGTACAGCCTTTCATCCACAGACTGATGGTCAAACTGAACGTTTGAACCAAGTT
TTAGAGGATATGCTACGAGCTTGTGTTATAGAGTTTCCAGGTAGTTGGGACTCTCATCTACATTTGATGGAGTTTGCTTATAACAACAGTTTCCAGGCTACCATCGGTAT
GGCACCATTTGAGGCTTTGTATGGCAAATGTTGTAGAACCCCTGTTTGTTGGAGTGAGGTTGGTGAACATAGATTGATGGGACCTGAATTAGTTCGGTCTACTAATGAGG
CTATTCAAAAGATTAGAGCACGTATGCAAACAGCGCAGAGTAGACAGAAGAGTTATGCAGATGTACGGCGAAAAGACCTTAAGTTCGATGTGGGAGAAAAGGTATTCTTG
AAGGTAGCACCTATGAAGGGTGTTATGCGTTTTGAGAAGAAAGGGAAGTTAAGTCCTCGTTTTGTTGGACCATTTGGGATCTTAGAGAGGGTTGGTGTTGTGGCGTATCG
CTTGGCATTACCACCATCACTCTCTGCAGTCCATAATGTTTTCCATGTTTCGATGTTGAGGAAGTATGTGGCCAATACATCTCATGTAGTAGACTACGAACCCTTGGAGA
TTGATGAGCATTTGAGCTATGTAGAACAACCTGTGGAGATTCTGGCTAGAGAGGTAAAGATGCTTCGTAATAGAAGCATTCCATTAGTAAAGGTTTTGTGGAGGAATCAT
CGAATTGAAGAGGCGACATGGGAGCGAGAAGAAGAGATGAGCAAAGTTATTTCAAGATTAAAACTTTCGAGGACGAAAGTTTCTTAA
Protein sequenceShow/hide protein sequence
KWENVSMDFISGLPKTLKGFTVILVVVDRLTKSAHFVPGKSTYTASKWAELYLTEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQV
LEDMLRACVIEFPGSWDSHLHLMEFAYNNSFQATIGMAPFEALYGKCCRTPVCWSEVGEHRLMGPELVRSTNEAIQKIRARMQTAQSRQKSYADVRRKDLKFDVGEKVFL
KVAPMKGVMRFEKKGKLSPRFVGPFGILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVANTSHVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNH
RIEEATWEREEEMSKVISRLKLSRTKVS