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CSPI06G13000 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G13000
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr6:11517732..11517902
RNA-Seq ExpressionCSPI06G13000
SyntenyCSPI06G13000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033059.1 uncharacterized protein E6C27_scaffold269G001710 [Cucumis melo var. makuwa]4.0e-0464.71Show/hide
Query:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKL
        M +LQAI+G++E+M ED   +QERRAQ QIEER L EDE+V+DLVEQER++
Subjt:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKL
KAA0047357.1 uncharacterized protein E6C27_scaffold754G00030 [Cucumis melo var. makuwa]4.0e-0469.09Show/hide
Query:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
        M ILQAI+GMM+ +R+D   RQERRAQQQ EER L EDEEVIDLVEQER++   E
Subjt:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
KGN47003.1 hypothetical protein Csa_020910 [Cucumis sativus]3.3e-1496.36Show/hide
Query:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
        MVILQAIKGMMEMMREDRQE QERRAQQQIEER LHEDEEVIDLVEQERKLEEEE
Subjt:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
XP_016902063.1 PREDICTED: uncharacterized protein LOC107991521 [Cucumis melo]4.0e-0469.09Show/hide
Query:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
        M ILQAI+GMM+ +R+D   RQERRAQQQ EER L EDEEVIDLVEQER++   E
Subjt:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
TrEMBL top hitse value%identityAlignment
A0A0A0KC03 Uncharacterized protein1.6e-1496.36Show/hide
Query:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
        MVILQAIKGMMEMMREDRQE QERRAQQQIEER LHEDEEVIDLVEQERKLEEEE
Subjt:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
A0A1S4E1G3 uncharacterized protein LOC1079915211.9e-0469.09Show/hide
Query:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
        M ILQAI+GMM+ +R+D   RQERRAQQQ EER L EDEEVIDLVEQER++   E
Subjt:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
A0A5A7TZH9 Retrotrans_gag domain-containing protein1.9e-0469.09Show/hide
Query:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
        M ILQAI+GMM+ +R+D   RQERRAQQQ EER L EDEEVIDLVEQER++   E
Subjt:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEE
A0A5D3BUV3 Uncharacterized protein1.9e-0464.71Show/hide
Query:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKL
        M +LQAI+G++E+M ED   +QERRAQ QIEER L EDE+V+DLVEQER++
Subjt:  MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATTCTTCAAGCCATTAAAGGAATGATGGAAATGATGAGGGAAGATAGGCAAGAAAGGCAAGAAAGGAGGGCACAACAACAAATAGAAGAACGACCCTTGCACGA
AGATGAGGAAGTGATTGATTTAGTTGAACAAGAAAGAAAGTTGGAGGAAGAGGAAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCATTCTTCAAGCCATTAAAGGAATGATGGAAATGATGAGGGAAGATAGGCAAGAAAGGCAAGAAAGGAGGGCACAACAACAAATAGAAGAACGACCCTTGCACGA
AGATGAGGAAGTGATTGATTTAGTTGAACAAGAAAGAAAGTTGGAGGAAGAGGAAACATGA
Protein sequenceShow/hide protein sequence
MVILQAIKGMMEMMREDRQERQERRAQQQIEERPLHEDEEVIDLVEQERKLEEEET