; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G13030 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G13030
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationChr6:11540448..11540867
RNA-Seq ExpressionCSPI06G13030
SyntenyCSPI06G13030
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038878070.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Benincasa hispida]3.3e-5275.54Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR
        VLTLTVDN SSNDT IAYLKKRFKH F+L+G F+H+R CAHILNLI+ DGLKDVNDTLI+I++  RFVRSS  RLAKFKKCIEEENIS  SMLC D+QT 
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD
        WNSTYL+LD  EK EKTFERLED DT+YMN++ KPT++D
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD

XP_038889294.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]5.7e-5274.1Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR
        V+TLTVDN SSNDTAIAYLKKRFKH  VLDG F+HVRCCAHILNLIVCDGL+D+ND+L++I++A RFVRSS  RL  FKKCI++ENI   SMLC D+ T 
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD
        WNSTYLML+ A KFEK FERLEDY+TVYMN + KPT+RD
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD

XP_038890289.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida]1.5e-5274.1Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR
        V+ LTVDN SSNDT IAYLKKRFKH  VLDG F+HVRCCAHILNLIVCDGLKDVND+L++I++A +FVRSS TRLA FKKCI+EENI+  SMLC D+ TR
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD
        W+ST+ ML+ A KFEK FERLEDYDT+YMN++ KPT+RD
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD

XP_038895827.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]6.3e-5174.82Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVR-SSTRLAKFKKCIEEENISCTSMLCFDIQTR
        V+TLTVDN SSNDT IAYLKKRFKH  VLDG F+HVRCCAHILNLIVCD LK +ND+L +I++A RFVR S TRL  FKKCI EENI   SMLC D+ TR
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVR-SSTRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD
        WNSTYLML  A KFEK FERLEDYDTVYMN++ KPT+RD
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD

XP_038896277.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]1.7e-5173.19Show/hide
Query:  LTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTRW
        +TLTVDN SSNDTAIAYLKK FKH  VLDG F+HVRCCAHILNLIVCDGLKD+ND+L++I++A RFVRSS  RLA FKKCI+E NI   S+LC D+ TRW
Subjt:  LTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTRW

Query:  NSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD
        NSTYLML+   KFEK FERLEDYDT+Y+N++ KPT+RD
Subjt:  NSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD

TrEMBL top hitse value%identityAlignment
A0A5A7SX87 Thiamine biosynthetic bifunctional enzyme TH12.3e-3861.83Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR
        V+TLTVDN SSNDTA+AYL KRF    +  G F+HVRCCAHILNLIV D  K+ ND + +I+ A RF+RSS  R  KFKKCIE E +SC S +C D+ T+
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND
        WNSTY+ML+ A KFEKTF+RLED D  Y +D
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND

A0A5A7T9L0 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.0e-3862.6Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR
        V+TLTVDN SSNDTA+AYL KRF    +  G F+HVRCCAHILNLIV D  K+ ND + +I++A RF+RSS TR  KFKKCIE E I+C S +C D+ TR
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND
        WNSTY+ML+ A KFEK F+RLED D  Y +D
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND

A0A5D3CR68 Zinc finger BED domain-containing protein RICESLEEPER 3-like6.6e-3861.83Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR
        V+TLTVDN SSNDTA+AYL KRF    +  G F+HVRCCAHILNLIV D  K+ ND + +I+ A RF+RSS  R  KFKKCIE E I+C S +C D+ TR
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND
        WNSTY+ML+ A KFEK F+RLED D  Y +D
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND

A0A5D3CXI1 Zinc finger BED domain-containing protein RICESLEEPER 3-like6.6e-3861.83Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR
        V+TLTVDN SSNDTA+AYL KRF    +  G F+HVRCCAHILNLIV D  K+ ND + +I+ A RF+RSS  R  KFKKCIE E I+C S +C D+ TR
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND
        WNSTY+ML+ A KFEK F+RLED D  Y +D
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND

A0A5D3E3I3 Thiamine biosynthetic bifunctional enzyme TH12.3e-3861.83Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR
        V+TLTVDN SSNDTA+AYL KRF    +  G F+HVRCCAHILNLIV D  K+ ND + +I+ A RF+RSS  R  KFKKCIE E +SC S +C D+ T+
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQTR

Query:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND
        WNSTY+ML+ A KFEKTF+RLED D  Y +D
Subjt:  WNSTYLMLDVAEKFEKTFERLEDYDTVYMND

SwissProt top hitse value%identityAlignment
B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 11.2e-1234.35Show/hide
Query:  VLTLTVDNP-SSNDTAIAYLKKRF--KHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSSTRL-AKFKKCIEEENISCTSMLCFDI
        + T+T+DN  SS+D   A L+     K+  +L G    VRC AHILN +  D +  ++  +  I+ + +F+++S     KF +   +  I  T  LC D+
Subjt:  VLTLTVDNP-SSNDTAIAYLKKRF--KHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSSTRL-AKFKKCIEEENISCTSMLCFDI

Query:  QTRWNSTYLMLDVAEKFEKTFERLEDYDTVY
         T+WN+TYLML  A  +++ F  LE  D  Y
Subjt:  QTRWNSTYLMLDVAEKFEKTFERLEDYDTVY

P03010 Putative AC9 transposase2.4e-1335.16Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHA---FVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDI
        +  L++DN S+N+ A+  + +  +      V DG F HVRC  HILNL+  DGL  +  T+ +I+     V+SS  +  +  KC  E ++  +  + +D+
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHA---FVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDI

Query:  QTRWNSTYLMLDVAEKFEKTFERLEDYD
         TRWNSTYLML  A  ++    RL+  D
Subjt:  QTRWNSTYLMLDVAEKFEKTFERLEDYD

P08770 Putative AC transposase2.4e-1335.16Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKRFKHA---FVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDI
        +  L++DN S+N+ A+  + +  +      V DG F HVRC  HILNL+  DGL  +  T+ +I+     V+SS  +  +  KC  E ++  +  + +D+
Subjt:  VLTLTVDNPSSNDTAIAYLKKRFKHA---FVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDI

Query:  QTRWNSTYLMLDVAEKFEKTFERLEDYD
         TRWNSTYLML  A  ++    RL+  D
Subjt:  QTRWNSTYLMLDVAEKFEKTFERLEDYD

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 22.4e-1335.11Show/hide
Query:  VLTLTVDNP-SSNDTAIAYLKKRF--KHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDI
        + T+T+DN  SS+D   A L+     K+  +L G    VRC AHILN +  D +  ++  +  I+ + +F+++S +R  KF +   +  I  T  LC D+
Subjt:  VLTLTVDNP-SSNDTAIAYLKKRF--KHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDI

Query:  QTRWNSTYLMLDVAEKFEKTFERLEDYDTVY
         T+WN+TYLML  A  +++ F  LE  D  Y
Subjt:  QTRWNSTYLMLDVAEKFEKTFERLEDYDTVY

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 37.0e-1335.34Show/hide
Query:  VLTLTVDN-PSSND----TAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVR-SSTRLAKFKKCIEEENISCTSMLCF
        + T+T+DN PSS+D      I YL  + K   ++ G    VRC AHILN +  D +  V+  +  I+ + +F++ SS    KF +   +  I     LC 
Subjt:  VLTLTVDN-PSSND----TAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVR-SSTRLAKFKKCIEEENISCTSMLCF

Query:  DIQTRWNSTYLMLDVAEKFEKTFERLEDYDTVY
        D+ T+WN+TYLML  A  +++ F  LE  D  Y
Subjt:  DIQTRWNSTYLMLDVAEKFEKTFERLEDYDTVY

Arabidopsis top hitse value%identityAlignment
AT3G42170.1 BED zinc finger ;hAT family dimerisation domain1.8e-0826.95Show/hide
Query:  VLTLTVDNPSSNDTAIAYLKKR--FKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQ
        +  +T ++P+SN +A+  ++ +   K+  +LDG  V   C A     +  D L+   D +  I+++ + V++S +   +F +  E+  +    +L  D Q
Subjt:  VLTLTVDNPSSNDTAIAYLKKR--FKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSS-TRLAKFKKCIEEENISCTSMLCFDIQ

Query:  TRWNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD
        T+WN+TY+ML  A + ++ F  L+  D  Y   K  P++ D
Subjt:  TRWNSTYLMLDVAEKFEKTFERLEDYDTVYMNDKCKPTSRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTGACCTTAACTGTTGATAATCCTTCATCAAATGATACAGCTATTGCTTATCTAAAGAAACGCTTCAAACATGCATTTGTGTTGGATGGATATTTTGTGCATGT
TAGGTGTTGTGCACATATACTGAATTTAATTGTGTGTGATGGTTTGAAAGATGTGAATGATACATTGATTCAAATTCAAAATGCTGCTAGGTTTGTTAGATCTTCTACAA
GACTTGCTAAATTTAAGAAGTGCATTGAGGAGGAAAACATATCTTGCACGAGTATGTTGTGCTTTGATATTCAAACTAGATGGAATTCCACATATTTAATGCTTGATGTA
GCTGAAAAGTTTGAAAAGACATTTGAGAGGTTAGAAGACTATGATACGGTCTACATGAATGACAAGTGTAAACCAACTTCTAGAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTGACCTTAACTGTTGATAATCCTTCATCAAATGATACAGCTATTGCTTATCTAAAGAAACGCTTCAAACATGCATTTGTGTTGGATGGATATTTTGTGCATGT
TAGGTGTTGTGCACATATACTGAATTTAATTGTGTGTGATGGTTTGAAAGATGTGAATGATACATTGATTCAAATTCAAAATGCTGCTAGGTTTGTTAGATCTTCTACAA
GACTTGCTAAATTTAAGAAGTGCATTGAGGAGGAAAACATATCTTGCACGAGTATGTTGTGCTTTGATATTCAAACTAGATGGAATTCCACATATTTAATGCTTGATGTA
GCTGAAAAGTTTGAAAAGACATTTGAGAGGTTAGAAGACTATGATACGGTCTACATGAATGACAAGTGTAAACCAACTTCTAGAGATTGA
Protein sequenceShow/hide protein sequence
MVLTLTVDNPSSNDTAIAYLKKRFKHAFVLDGYFVHVRCCAHILNLIVCDGLKDVNDTLIQIQNAARFVRSSTRLAKFKKCIEEENISCTSMLCFDIQTRWNSTYLMLDV
AEKFEKTFERLEDYDTVYMNDKCKPTSRD