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CSPI06G13270 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G13270
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr6:11754361..11754703
RNA-Seq ExpressionCSPI06G13270
SyntenyCSPI06G13270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1836378.1 unnamed protein product [Ananas comosus var. bracteatus]2.6e-1087.8Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MS +TKLDKDEKGK VDIK YRGMIGSL+YLTASRPDIMFS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

CAN80386.1 hypothetical protein VITISV_039772 [Vitis vinifera]5.9e-1055.38Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFSDIPMRILPVGYLTVKVLEGLANFL
        MS++ KLDKDEKGKC+D   YRGMIGSL+YLTASRPDIM+      +LP G    +V + +   L
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFSDIPMRILPVGYLTVKVLEGLANFL

GAV66678.1 hypothetical protein CFOL_v3_10188 [Cephalotus follicularis]7.7e-1080.49Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MST+TKLDKDE+GKC+D K YR MIGSL+YLTASRPDI+FS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

WP_217833186.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.4e-1190.24Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MSTTTKLDKDEK KCVDIK YRGMIGSL+YLTASRPDI+FS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

XP_020113283.1 uncharacterized protein LOC109727552, partial [Ananas comosus]2.6e-1087.8Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MS +TKLDKDEKGK VDIK YRGMIGSL+YLTASRPDIMFS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

TrEMBL top hitse value%identityAlignment
A0A2N9E4Z2 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-1085.37Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MS +TKLDKDEKGK VD+K YRGMIGSL+YLTASRPDIMFS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

A0A2N9G065 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-1085.37Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MS +TKLDKDEKGK VD+K YRGMIGSL+YLTASRPDIMFS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

A0A2N9HLC7 CCHC-type domain-containing protein2.2e-1085.37Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MS +TKLDKDEKGK VD+K YRGMIGSL+YLTASRPDIMFS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

A0A6P5HB69 uncharacterized protein LOC1097275521.3e-1087.8Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MS +TKLDKDEKGK VDIK YRGMIGSL+YLTASRPDIMFS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

A0A6V7Q084 Uncharacterized protein1.3e-1087.8Show/hide
Query:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS
        MS +TKLDKDEKGK VDIK YRGMIGSL+YLTASRPDIMFS
Subjt:  MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGGTAAGTGTGTGGATATAAAGACTTATCGAGGTATGATTGGATCTTTAATTTATTTGACTGCTAGTAGACCCGA
TATCATGTTTAGTGATATTCCGATGCGGATTTTGCCGGTAGGTTACTTGACCGTAAAAGTACTAGAGGGACTTGCCAATTTCTTGGGAGTTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGGTAAGTGTGTGGATATAAAGACTTATCGAGGTATGATTGGATCTTTAATTTATTTGACTGCTAGTAGACCCGA
TATCATGTTTAGTGATATTCCGATGCGGATTTTGCCGGTAGGTTACTTGACCGTAAAAGTACTAGAGGGACTTGCCAATTTCTTGGGAGTTCCTTAG
Protein sequenceShow/hide protein sequence
MSTTTKLDKDEKGKCVDIKTYRGMIGSLIYLTASRPDIMFSDIPMRILPVGYLTVKVLEGLANFLGVP