; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G13630 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G13630
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr6:12110701..12112712
RNA-Seq ExpressionCSPI06G13630
SyntenyCSPI06G13630
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]0.0e+0099.33Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPDDEVFFTEVMEPWTMYFD AARRSGAGAGIV ISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]0.0e+0099.33Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPDDEVFFTEVMEPWTMYFD AARRSGAGAGIV ISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]0.0e+0099.33Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPDDEVFFTEVMEPWTMYFD AARRSGAGAGIV ISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]0.0e+0099.33Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPDDEVFFTEVMEPWTMYFD AARRSGAGAGIV ISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

XP_031742888.1 uncharacterized protein LOC116404510 [Cucumis sativus]0.0e+0099.33Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPDDEVFFTEVMEPWTMYFD AARRSGAGAGIV ISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVN+ATSYLIDEEDWRQPIIEYLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H0.0e+0087.69Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLC+ LPDDEVFFT+++EPWTMYFD AARRSGAGAGIV IS E+HMLPYSF L+ELC NNVAEYQALIIGLQ+ALEI VSFI++YGDSKLIINQLSLQYD
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKHEDLKPYF YARQLME+FD+VML+HVPR ENKRADALANLATAL MPD+V LNIPLCQ+WI+PP+  ECQE NI  S+LI+EEDW QPIIEYLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        PKDSRHK E+RRRAAHFIYYKGTLYRR LEG+FLRCLG+++S+KAL+E HAGVCGAHQSG KLQFQLRRMGYYWPKM+QDS+DY KKCE CQYHANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        P EPLHP+VASW FEAWGLDLVGPITPKSSAGHSYILAAT+YFS+WAEAI LREAKKENV +FIRTHIIYRYGIPHRIVTDNG+QFSNSM+DKLCEKFKF
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        +QYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQE+I EALWAYRTTHRT T VTPYSLVYGVE  LPLEREIPSLRM VQEGLTTEDNVKLRLQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELE LDEKRLEAQQ LECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRH GNKFTPKWDGPYIVKEVYTNGAYKIVD+DGL+IG INGKFLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

A0A5A7TZU9 Ribonuclease H2.4e-30581.36Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPD+EV F E MEPW M+FD AARRSGAG GIV ISPEKHMLPYSF L ELCSNNVAEYQA IIGLQ+A E G+  IE++GDSKLIINQLS QY+
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKH+DLKPYF+YAR+LM++FD+++LEH+PR ENK+ADALANLATALT+ +D+ +NI LCQ+WI+P +  + +E ++ + Y IDEEDWRQPII+YLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        P D RH+ EIRRRAA FIYYK TLYRRS EGL LRCLGKE+S KAL+E H+G+CGAHQSGPKLQ+QL+RMGYYWP MI DS+ + K CE CQ+HANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPT+ASWPFEAWGLDLVGPITPKS+AGHSYILA TDYFS+WAEA+ LREAKKEN+ +F++THIIYRYGIPHRIVTDNG+QF+N++MDKLCEKF F
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQ+KSSMYNAAANGLAEAFNKTLC+LLKK+VSK+KRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLEREIPSLRMA+QEGLTTEDN +LRL+
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEV+TNGAYKI+DQDGLRIGPING+FLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

A0A5A7UID6 Ribonuclease H1.4e-30080.7Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPD+EV F E ME W M+FD  ARRSGAG GIV ISPEKHMLPYSF L ELCSNNVAEYQA IIGLQ+A E G+  IE++GDSKLIINQLS QY 
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKH+DLKPYF+YAR+LM++FD+++LEH+PR ENK+ADALANLAT LT+ +D+ +NI LCQ+WI+P +  + +E ++ + Y+IDEEDWRQPII+YLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        P D RH+ EIRRRAA FIYYK TLYRRS EGL LRCLGKE+S KAL+E H+G+CGAHQSGPKLQ+QL+RMGYYWP MI DS+ + K CE CQ+HANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPT+ASWPFEAWGLDLV PITPKS+AGHSYILA TDYFS+WAEA+ LREAKKEN+ +F+RTHIIYRYGIPHRIVTDNG+QF+N++MDKLCEKF F
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQYKSSMYNAAANGLAEAFNKTLC+LLKK+VSK+KRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLEREIPSLRMA+Q+GLTTEDN +LRLQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQVGDLVLAVRRPIITTRH GNKFTPKWDGPYIVKEV+TNGAYKI+DQDGLRIGPING+FLKKF 
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

A0A5D3BTY1 Ribonuclease H1.0e-30381.2Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPD+EV F E MEPW M+FD AARRSGAG GIV ISPEKHMLPYSF L ELCSNNVAEYQA IIGLQ+A E G+  IE++GDSKLIINQLS QY+
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKH+DLKPYF+YAR+LM++FD+++LEH+PR ENK+ADALANLATALT+ +D+ +NI LCQ+WI+P +  + +E ++ + Y IDEEDWRQPII+YLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        P D RH+ EIRRRAA FIYYK TLYRRS EGL LRCLGKE+S KAL+E H+G+CGAHQSGPKLQ+QL+RMGYYWP MI DS+ + K CE CQ+HANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPT+ASWPFE WGLDLVGPITPKSSAGHSYILA TDYFSRWAEA+ LREAKKEN+ +F++T+IIYRYGIPHRIVTDNG+QF+N++MDKLCEKF F
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQYKSSMYNAAANGLAEAFNKTLC+LLKK+VSK+KRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLE+EIPSLRM++QEGLTT+DN +L LQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEV+TNGAYKI+DQDGLRIGPINGKFLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

A0A5D3D1E5 Ribonuclease H1.4e-30581.53Show/hide
Query:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD
        KLCDDLPD+EV F E MEPW M+FD AARRSGAG GIV ISPEKHMLPYSF L ELCSNNVAEYQA IIGLQ+A E G+  IE++GDSKLIINQLS QY+
Subjt:  KLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYD

Query:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL
        VKH+DLKPYF+YAR+LM++FD+++LEH+PR ENK+ADALANLATALT+ +D+ +NI LCQ+WI+P +  + +E ++ + Y IDEEDWRQPII+YLEHGKL
Subjt:  VKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEEDWRQPIIEYLEHGKL

Query:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ
        P D RH+ EIRRRAA FIYYK TLYRRS EGL LRCLGKE+S KAL+E H+G+CGAHQSGPKLQ+QL+RMGYYWP MI DS+ + K CE CQ+HANFIHQ
Subjt:  PKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQ

Query:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF
        PPEPLHPT+ASWPFEAWGLDLVGPITPKS+AGHSYILA TDYFS+WAEA+ LREAKKEN+ +F++THIIYRYGIPHRIVTDNG+QF+N++MDKLCEKF F
Subjt:  PPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKF

Query:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ
        KQ+KSSMYNAAANGLAEAFNKTLC+LLKK+VSK+KRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVE VLPLEREIPSLRMA+QEGLTTEDN +LRLQ
Subjt:  KQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQ

Query:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY
        ELEALDEKRLEAQQALECYQARMSKAFDK V+PRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEV+TNGAYKI+DQDGL+IGPINGKFLKKFY
Subjt:  ELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFY

Query:  A
        A
Subjt:  A

SwissProt top hitse value%identityAlignment
P03360 Gag-Pol polyprotein (Fragment)1.5e-1727.24Show/hide
Query:  PFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAA
        P E W +D    IT K   G+ Y+L   D FS W EA   +    + V   +   II R+G+P +I +DNG  F   +  +LCE           Y   +
Subjt:  PFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAA

Query:  NGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEA
        +G  E  N+TL   + K+  ++  DW   + +AL   R T     G++P+ ++YG++  +     +P +       +T +      L+ L+AL   R  A
Subjt:  NGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEA

Query:  QQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV
        +  L   + ++ +   +  +   FQ GDLV          +H   +  P+WDGPY V
Subjt:  QQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV

Q5DTZ0 Protein NYNRIN1.4e-1224.57Show/hide
Query:  VHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIH------QPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDY
        VH    G HQ        +R +G +WP M     DY + C  C    N I       + P PL  T    P+ +  +++VGP+T  S  GH ++L   D 
Subjt:  VHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIH------QPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDY

Query:  FSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMM--------DKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKS
         +RW EA  L+      VA  +  H+  R+G+P R+    G QF+  ++         ++    +  Q+   M + A      A        LK+ +   
Subjt:  FSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMM--------DKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKS

Query:  KRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPR
         + W   +     A+R    + T  TP+ ++ G E  L +E     +  A  EGL  +  +   ++EL  LD     A++A E  +   ++ F +  +  
Subjt:  KRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPR

Query:  SFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKI
         + VGD VL +  P        N  + KW GP+ + +  +   Y++
Subjt:  SFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKI

Q9HSF6 Ribonuclease HI3.8e-1339.84Show/hide
Query:  YFDDAARRS--GAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKF
        YFD A+R +   A  G V +S +  ++          +NN AEY ALI  L+ A + G   IE+ GDS+L+  QL+  +D    DL+     AR+L+  F
Subjt:  YFDDAARRS--GAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKF

Query:  DNVMLEHVPRVENKRADALANLA
        D+  + HVPR  N+RADALAN A
Subjt:  DNVMLEHVPRVENKRADALANLA

Q9P2P1 Protein NYNRIN1.0e-1325.72Show/hide
Query:  VHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIH------QPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDY
        VH    GAHQ   +   +LR +G +WP M +   DY + C  C    N I       + P PL  T    P+    +++VGP+T  S  GH ++L   D 
Subjt:  VHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIH------QPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDY

Query:  FSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYN-----AAANGLAEAFNKTLCNLLKKIVSKSKRD
         +RW EA  L+      VA  +  H+  R+G+P R+    G QF+  ++   C      Q  S   +       ++G    F +     LK+ +    + 
Subjt:  FSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYN-----AAANGLAEAFNKTLCNLLKKIVSKSKRD

Query:  WQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVL--PLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDE-KRLEAQQALECYQARMSKAFDKHVKPR
        W   +     A+R    + T  TP+ ++ G E  L  PL  E+ S  +   EGL      K+ +  L+ + E   L  + A +  +   ++ F +  + +
Subjt:  WQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVL--PLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDE-KRLEAQQALECYQARMSKAFDKHVKPR

Query:  SFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKI
         + VGD VL +  P        N  + KW GP+ + +  +   Y+I
Subjt:  SFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKI

Q9TTC1 Gag-Pol polyprotein2.2e-1325.08Show/hide
Query:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK
        H    KL   + R  ++ P +     +   KC+ C    N +    EP        P   W +D    + P    G+ Y+L   D FS W EA   +   
Subjt:  HQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAK

Query:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKI-VSKSKRDWQEKIGEALWAYRTTHRT
           V   I   I+ R+GIP  + +DNG  F   +   L  +          Y   ++G  E  N+T+   L K+ +    +DW   +  AL   R T   
Subjt:  KENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKI-VSKSKRDWQEKIGEALWAYRTTHRT

Query:  PTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEA-QQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRH
          G+TPY +++G    +    E+           +  D   +    L+AL+  R +   Q  E Y+            P  FQVGD VL         RH
Subjt:  PTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEA-QQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRH

Query:  TGNKFTPKWDGPYIV
              P+W GPY+V
Subjt:  TGNKFTPKWDGPYIV

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein8.6e-1334.25Show/hide
Query:  EDSLTSEV-------DHPRRCVLHYSPIEKLCDDLP----DDEVFFTEVMEPWTMYFDDAARRSG--AGAGIVHISPEKHMLPYSFALSELCSNNVAEYQ
        ED  TSE        D      + Y P+EKL    P     DE  F E        FD A++ +   +GA  V  + +  ++        + +NN AEY 
Subjt:  EDSLTSEV-------DHPRRCVLHYSPIEKLCDDLP----DDEVFFTEVMEPWTMYFDDAARRSG--AGAGIVHISPEKHMLPYSFALSELCSNNVAEYQ

Query:  ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATAL
        ALI+GL+ A+E G   I+V GDSKL+  Q+  Q+ V HE L      A+ L  K  +  + HV R  N  AD  ANLA  L
Subjt:  ALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATAL

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-1134.38Show/hide
Query:  TMYFDDAARRS--GAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLME
        T+ FD A++ +   AGAG V  + +  +L Y        +NNVAEY+AL++GL+ AL+ G   + V GDS L+  Q+   +   H  +      A++LM 
Subjt:  TMYFDDAARRS--GAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLME

Query:  KFDNVMLEHVPRVENKRADALANLATAL
         F    ++H+ R +N  AD  AN A  L
Subjt:  KFDNVMLEHVPRVENKRADALANLATAL

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-1134.38Show/hide
Query:  TMYFDDAARRS--GAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLME
        T+ FD A++ +   AGAG V  + +  +L Y        +NNVAEY+AL++GL+ AL+ G   + V GDS L+  Q+   +   H  +      A++LM 
Subjt:  TMYFDDAARRS--GAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLME

Query:  KFDNVMLEHVPRVENKRADALANLATAL
         F    ++H+ R +N  AD  AN A  L
Subjt:  KFDNVMLEHVPRVENKRADALANLATAL

AT5G51080.1 RNase H family protein2.4e-1041.3Show/hide
Query:  LCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALT
        + +NN AEY  LI+GL+ A+E G + I+V  DSKL+  Q+  Q+ V HE L      A+QL +K  +  + HV R  N  AD  AN+A  L+
Subjt:  LCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALT

AT5G51080.2 RNase H family protein2.4e-1041.3Show/hide
Query:  LCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALT
        + +NN AEY  LI+GL+ A+E G + I+V  DSKL+  Q+  Q+ V HE L      A+QL +K  +  + HV R  N  AD  AN+A  L+
Subjt:  LCSNNVAEYQALIIGLQIALEIGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTGATCCAGAGAGAATTCTTCCAAGAGCTAGAAGACTCCCTAACTTCTGAAGTTGACCACCCTCGAAGATGTGTCTTGCACTATTCTCCTATCGAGAAGTTATG
TGATGACCTACCAGACGATGAGGTTTTCTTCACAGAAGTTATGGAACCTTGGACTATGTACTTCGATGATGCAGCTCGAAGAAGTGGTGCGGGGGCAGGCATTGTCCACA
TTTCTCCTGAGAAGCATATGTTGCCTTATAGCTTTGCACTTTCCGAATTGTGTTCAAACAATGTGGCTGAATATCAGGCTTTGATAATTGGCCTTCAAATAGCATTAGAA
ATCGGAGTGTCATTCATAGAGGTCTATGGTGATTCAAAATTGATAATCAATCAACTCTCGCTTCAATATGACGTGAAACATGAAGACTTGAAGCCATATTTTGCTTATGC
TCGACAATTGATGGAAAAGTTTGATAATGTGATGTTAGAACATGTCCCTAGAGTAGAAAATAAGAGAGCGGATGCATTGGCAAATTTAGCCACGGCCTTGACCATGCCAG
ATGATGTAACTCTGAACATACCACTTTGTCAACGATGGATTATACCCCCAGTTAGGCCTGAATGTCAGGAAGTGAACATAGCAACATCCTATTTGATTGATGAAGAAGAT
TGGCGTCAACCCATCATAGAGTATCTAGAACATGGAAAGCTTCCAAAGGATTCTCGTCATAAAATTGAGATACGAAGAAGGGCAGCACACTTCATTTATTACAAGGGAAC
TTTATATCGCCGTTCTCTTGAAGGGCTCTTCCTTCGATGTCTCGGAAAGGAAGATTCGGTAAAAGCTCTAAAGGAAGTACATGCAGGTGTTTGTGGAGCACATCAATCGG
GACCAAAGCTTCAATTCCAGCTAAGAAGAATGGGCTACTACTGGCCTAAGATGATCCAAGATTCAATAGACTATGTGAAGAAGTGTGAGCCTTGTCAATACCATGCAAAC
TTCATACACCAACCTCCAGAACCTCTTCATCCAACTGTGGCTTCTTGGCCTTTTGAGGCTTGGGGACTCGATCTGGTTGGCCCCATTACACCAAAATCATCAGCAGGACA
TTCTTATATCCTAGCAGCAACAGACTATTTTTCAAGGTGGGCTGAGGCCATTTCCTTGAGAGAAGCCAAGAAGGAGAACGTGGCAGACTTTATTCGAACACACATCATCT
ATCGATACGGTATTCCACATCGAATCGTGACGGATAATGGAAAGCAATTCTCCAATAGTATGATGGACAAGTTATGTGAAAAATTCAAATTCAAGCAATATAAGTCATCC
ATGTACAACGCAGCTGCGAATGGACTAGCAGAAGCATTCAACAAAACATTGTGTAATCTTTTAAAGAAAATTGTCTCCAAGTCAAAGAGGGATTGGCAAGAAAAGATCGG
CGAGGCATTATGGGCTTATCGGACGACTCATCGCACCCCTACAGGGGTTACACCATATTCGCTTGTTTACGGTGTGGAGGATGTCCTTCCTCTCGAAAGGGAAATTCCGT
CACTAAGAATGGCAGTACAAGAGGGATTGACTACCGAAGATAATGTGAAGTTACGTCTTCAAGAATTAGAAGCACTTGACGAAAAGCGATTAGAGGCTCAGCAAGCATTG
GAATGTTATCAAGCGAGAATGTCCAAAGCTTTTGATAAACACGTTAAACCTCGCTCCTTTCAAGTCGGTGATCTAGTACTTGCCGTAAGGAGACCGATCATCACAACAAG
GCATACAGGAAATAAGTTCACACCTAAATGGGATGGACCCTACATTGTTAAAGAAGTTTATACAAATGGCGCATACAAGATCGTTGATCAAGACGGACTACGAATTGGCC
CAATCAATGGTAAATTTCTTAAAAAATTTTATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCTGATCCAGAGAGAATTCTTCCAAGAGCTAGAAGACTCCCTAACTTCTGAAGTTGACCACCCTCGAAGATGTGTCTTGCACTATTCTCCTATCGAGAAGTTATG
TGATGACCTACCAGACGATGAGGTTTTCTTCACAGAAGTTATGGAACCTTGGACTATGTACTTCGATGATGCAGCTCGAAGAAGTGGTGCGGGGGCAGGCATTGTCCACA
TTTCTCCTGAGAAGCATATGTTGCCTTATAGCTTTGCACTTTCCGAATTGTGTTCAAACAATGTGGCTGAATATCAGGCTTTGATAATTGGCCTTCAAATAGCATTAGAA
ATCGGAGTGTCATTCATAGAGGTCTATGGTGATTCAAAATTGATAATCAATCAACTCTCGCTTCAATATGACGTGAAACATGAAGACTTGAAGCCATATTTTGCTTATGC
TCGACAATTGATGGAAAAGTTTGATAATGTGATGTTAGAACATGTCCCTAGAGTAGAAAATAAGAGAGCGGATGCATTGGCAAATTTAGCCACGGCCTTGACCATGCCAG
ATGATGTAACTCTGAACATACCACTTTGTCAACGATGGATTATACCCCCAGTTAGGCCTGAATGTCAGGAAGTGAACATAGCAACATCCTATTTGATTGATGAAGAAGAT
TGGCGTCAACCCATCATAGAGTATCTAGAACATGGAAAGCTTCCAAAGGATTCTCGTCATAAAATTGAGATACGAAGAAGGGCAGCACACTTCATTTATTACAAGGGAAC
TTTATATCGCCGTTCTCTTGAAGGGCTCTTCCTTCGATGTCTCGGAAAGGAAGATTCGGTAAAAGCTCTAAAGGAAGTACATGCAGGTGTTTGTGGAGCACATCAATCGG
GACCAAAGCTTCAATTCCAGCTAAGAAGAATGGGCTACTACTGGCCTAAGATGATCCAAGATTCAATAGACTATGTGAAGAAGTGTGAGCCTTGTCAATACCATGCAAAC
TTCATACACCAACCTCCAGAACCTCTTCATCCAACTGTGGCTTCTTGGCCTTTTGAGGCTTGGGGACTCGATCTGGTTGGCCCCATTACACCAAAATCATCAGCAGGACA
TTCTTATATCCTAGCAGCAACAGACTATTTTTCAAGGTGGGCTGAGGCCATTTCCTTGAGAGAAGCCAAGAAGGAGAACGTGGCAGACTTTATTCGAACACACATCATCT
ATCGATACGGTATTCCACATCGAATCGTGACGGATAATGGAAAGCAATTCTCCAATAGTATGATGGACAAGTTATGTGAAAAATTCAAATTCAAGCAATATAAGTCATCC
ATGTACAACGCAGCTGCGAATGGACTAGCAGAAGCATTCAACAAAACATTGTGTAATCTTTTAAAGAAAATTGTCTCCAAGTCAAAGAGGGATTGGCAAGAAAAGATCGG
CGAGGCATTATGGGCTTATCGGACGACTCATCGCACCCCTACAGGGGTTACACCATATTCGCTTGTTTACGGTGTGGAGGATGTCCTTCCTCTCGAAAGGGAAATTCCGT
CACTAAGAATGGCAGTACAAGAGGGATTGACTACCGAAGATAATGTGAAGTTACGTCTTCAAGAATTAGAAGCACTTGACGAAAAGCGATTAGAGGCTCAGCAAGCATTG
GAATGTTATCAAGCGAGAATGTCCAAAGCTTTTGATAAACACGTTAAACCTCGCTCCTTTCAAGTCGGTGATCTAGTACTTGCCGTAAGGAGACCGATCATCACAACAAG
GCATACAGGAAATAAGTTCACACCTAAATGGGATGGACCCTACATTGTTAAAGAAGTTTATACAAATGGCGCATACAAGATCGTTGATCAAGACGGACTACGAATTGGCC
CAATCAATGGTAAATTTCTTAAAAAATTTTATGCTTAA
Protein sequenceShow/hide protein sequence
MGLIQREFFQELEDSLTSEVDHPRRCVLHYSPIEKLCDDLPDDEVFFTEVMEPWTMYFDDAARRSGAGAGIVHISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALE
IGVSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDNVMLEHVPRVENKRADALANLATALTMPDDVTLNIPLCQRWIIPPVRPECQEVNIATSYLIDEED
WRQPIIEYLEHGKLPKDSRHKIEIRRRAAHFIYYKGTLYRRSLEGLFLRCLGKEDSVKALKEVHAGVCGAHQSGPKLQFQLRRMGYYWPKMIQDSIDYVKKCEPCQYHAN
FIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNSMMDKLCEKFKFKQYKSS
MYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVYGVEDVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAQQAL
ECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGLRIGPINGKFLKKFYA