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CSPI06G14200 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G14200
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTropomyosin
Genome locationChr6:12502763..12504166
RNA-Seq ExpressionCSPI06G14200
SyntenyCSPI06G14200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]2.2e-3792.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS-G
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS G
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS-G

Query:  AGGD
        AGGD
Subjt:  AGGD

KAE8645885.1 hypothetical protein Csa_017706 [Cucumis sativus]9.4e-44100Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA

Query:  GGD
        GGD
Subjt:  GGD

KAG6570682.1 hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2983.33Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAG
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G   AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG G G
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAG

Query:  GD
        GD
Subjt:  GD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-2983.33Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAG
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG G G
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAG

Query:  GD
        GD
Subjt:  GD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]2.2e-3792.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS-G
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS G
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS-G

Query:  AGGD
        AGGD
Subjt:  AGGD

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein4.6e-44100Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGA

Query:  GGD
        GGD
Subjt:  GGD

A0A5A7V5U9 Tropomyosin1.1e-3792.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS-G
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS G
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS-G

Query:  AGGD
        AGGD
Subjt:  AGGD

A0A5D3CVK1 Tropomyosin1.1e-3792.31Show/hide
Query:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS-G
        MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+  AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS G
Subjt:  MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGS-G

Query:  AGGD
        AGGD
Subjt:  AGGD

A0A6J1D515 circumsporozoite protein-like1.5e-2372.64Show/hide
Query:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA---SATAVAAVAV---TAVTMDALDDDGGSTHVHGGEGG
        S+KICFCIPRHKNGHKA+GGSEKSSKSKPSRRKS R  K GKHSSSSDSSG+GN     AA   S  AVAAV V   TA TMDA++DDGGS H HGG GG
Subjt:  SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAA---SATAVAAVAV---TAVTMDALDDDGGSTHVHGGEGG

Query:  SGAGGD
         G GGD
Subjt:  SGAGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATC
CCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGG
TCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG
mRNA sequenceShow/hide mRNA sequence
GCATAGCGTGGAAGAGGTTCGATCTTAGCTGGATTGCACCAATTGGGCAAATTTCCCCTACAAATCACTTTAGAGTAAAGAGGGGGGAAAAGAAAGGAGAGAAGACAGCA
ACACAAAAAAGGTTGGCGAAAGGAACTCTTACTATAATTATAGATTCAATGAGGAAGACATAGCAGGGAAAGAAGCTCAACTATGGAGTCCTCATCAAAGATTTGTTTCT
GTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCCCATCGAGACTCAAAAGAAGGTAAGCAT
TCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGA
CGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAGGAAATTGGAGGATTGGAGTTCTTATTTATTCTTTGCCTTTTCTGAT
TGCATCTGTTTGGTGATTCCCTTCTGATGGTTCTTTGCTGAATTCTGGTTGATGTGTGGGAATTTTATCTTTGCTTGAATTACATTATATGATTATGAGCATTTGGGTTT
GAATTTCTTCTACGCTATAATATATATATACATATAGGAAACTTTGTACATCTTGTAATGGTGGCTGTTCTCAACTCTGCTTTGAACTTTTTTTTAGCTCATTGCTTCGC
AAGGAATTCAAGGGCACATTTAAGTTGATTTTAC
Protein sequenceShow/hide protein sequence
MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD