; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G14690 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G14690
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTHO complex subunit 4A-like
Genome locationChr6:12825298..12828995
RNA-Seq ExpressionCSPI06G14690
SyntenyCSPI06G14690
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR025715 - Chromatin target of PRMT1 protein, C-terminal
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061942.1 THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa]5.7e-11397.7Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKV
         GFGRGRGRGRGPSEK+
Subjt:  HGFGRGRGRGRGPSEKV

KAG7035419.1 THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. argyrosperma]9.8e-11391.6Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQHDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQR-
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN NGAPRRQQGRGG PSRQR 
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQR-

Query:  GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
        G G GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

XP_004143092.1 THO complex subunit 4A [Cucumis sativus]8.3e-128100Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
        HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

XP_008448384.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo]2.9e-12598.31Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
         GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

XP_038901991.1 THO complex subunit 4A-like [Benincasa hispida]1.2e-12397.47Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADP SGF  QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN NGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
         GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

TrEMBL top hitse value%identityAlignment
A0A0A0KBU2 RRM domain-containing protein4.0e-128100Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
        HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

A0A1S3BK70 THO complex subunit 4A-like isoform X11.4e-12598.31Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
         GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

A0A5A7V158 THO complex subunit 4A-like isoform X12.8e-11397.7Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQHDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
        IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRG

Query:  HGFGRGRGRGRGPSEKV
         GFGRGRGRGRGPSEK+
Subjt:  HGFGRGRGRGRGPSEKV

A0A6J1G721 THO complex subunit 4A-like4.7e-11391.6Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQHDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQR-
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN NGAPRRQQGRGG PSRQR 
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQR-

Query:  GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
        G G GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

A0A6J1L1M6 THO complex subunit 4A-like1.4e-11291.18Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED
        MAAPLDMSLDDIIKNNKKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQHDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNED
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNED

Query:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQR-
        IKELFSEVGDMKR+GIHYDKSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN NG PRRQQGRGG PSRQR 
Subjt:  IKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQR-

Query:  GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
        G G GRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Subjt:  GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

SwissProt top hitse value%identityAlignment
O08583 THO complex subunit 42.7e-4143.41Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFLV
        MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P  A        NR  PYS PK     WQHD+F    SGF  
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFLV

Query:  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTA
          G  + ++TG KL +SNLD+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+PM I++V + I T    P  
Subjt:  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTA

Query:  AVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA
        ++N    +        G GG     RG   GRGRG GR   +++SAE+LDA L+ Y+A
Subjt:  AVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA

Q3T0I4 THO complex subunit 44.7e-4143.4Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFL
        MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P  A         NR  PYS PK     WQHD+F    SGF 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRGRGRG-------------------SGPGPVRRFPNRA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFL

Query:  VQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPT
           G  + ++TG KL +SNLD+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+PM I++V + I T    P 
Subjt:  VQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPT

Query:  AAVNPFENSNGAPRRQQGR------GGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA
         +VN      G   R +G       GG     RG   GRGRG GR   +++SAE+LDA L+ Y+A
Subjt:  AAVNPFENSNGAPRRQQGR------GGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHA

Q6NQ72 THO complex subunit 4D1.9e-4242.32Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS------APKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTK
        M+  L+M+LD+I+K  K +RSG    SRGRGR     G G GP RR P  A N  P S        +     WQ  +F D      ++   AS ++ GT+
Subjt:  MAAPLDMSLDDIIKNNKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS------APKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTK

Query:  LYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV-----------------
        L+++NLD GV+NEDI+ELFSE+G+++R+ IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+ A                  
Subjt:  LYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAV-----------------

Query:  ----------------------GPTAAVN---PFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEK---VSAEDLDADLEKYHAESM
                              GP   V+   P  N  G   R  GRGG  +R RG+G GRGRG GRG  +K    SA DLD DLE YHA++M
Subjt:  ----------------------GPTAAVN---PFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEK---VSAEDLDADLEKYHAESM

Q8L719 THO complex subunit 4B8.2e-6254.83Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR
        M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT PYS P    +A +  WQ+D+FA  +S     G       G 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR

Query:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-
         S+I+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKIEIVGTN+S PA+   A    
Subjt:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-

Query:  PF----------ENSNG-------APRRQQGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ
        PF          EN NG          R +GRGG   R RG GFG          RGRG     GRG  E VSAEDLDA+L+KYH E+M+
Subjt:  PF----------ENSNG-------APRRQQGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ

Q8L773 THO complex subunit 4A6.3e-7062.95Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R  QGRGG 
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP

Query:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          +QRG         G GRGR  G+GP+EK+SAEDLDADL+KYH+  M+ N
Subjt:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

Arabidopsis top hitse value%identityAlignment
AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.8e-6354.83Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR
        M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT PYS P    +A +  WQ+D+FA  +S     G       G 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR

Query:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-
         S+I+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKIEIVGTN+S PA+   A    
Subjt:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-

Query:  PF----------ENSNG-------APRRQQGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ
        PF          EN NG          R +GRGG   R RG GFG          RGRG     GRG  E VSAEDLDA+L+KYH E+M+
Subjt:  PF----------ENSNG-------APRRQQGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ

AT5G02530.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-6254.86Show/hide
Query:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR
        M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT PYS P    +A +  WQ+D+FA  +S     G       G 
Subjt:  MAAPLDMSLDDIIKNNKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-PYSAP----KAPETTWQHDMFADPSSGFLVQG-------GR

Query:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-
         S+I+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKIEIVGTN+S PA+   A    
Subjt:  ASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVN-

Query:  PF----------ENSNGAPRRQ-----QGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ
        PF          EN NG          +GRGG   R RG GFG          RGRG     GRG  E VSAEDLDA+L+KYH E+M+
Subjt:  PF----------ENSNGAPRRQ-----QGRGGPPSRQRGHGFG----------RGRG----RGRGPSEKVSAEDLDADLEKYHAESMQ

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.4e-7162.95Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R  QGRGG 
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP

Query:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          +QRG         G GRGR  G+GP+EK+SAEDLDADL+KYH+  M+ N
Subjt:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

AT5G59950.3 RNA-binding (RRM/RBD/RNP motifs) family protein3.2e-6962.55Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY +  APE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP R  QGRGG 
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP-RRQQGRGGP

Query:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
          +QRG         G GRGR  G+GP+EK+SAEDLDADL+KYH+  M+ N
Subjt:  PSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein5.8e-7162.7Show/hide
Query:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG
        M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE+TW HDMF+D S     + GR+SA I+TGTKLYISNLDYG
Subjt:  MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPETTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYG

Query:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP--RRQQGRGG
        V NEDIKELF+EVG++KR+ +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       N   NSNGAP  R  QGRGG
Subjt:  VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAP--RRQQGRGG

Query:  PPSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
           +QRG         G GRGR  G+GP+EK+SAEDLDADL+KYH+  M+ N
Subjt:  PPSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCG
TAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGC
AAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGAT
ATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAA
CGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGG
CTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAA
GATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG
mRNA sequenceShow/hide mRNA sequence
CGCGTATAAACTACGCGGTCTTCTTTAGGTCTTTATATCGACTAAAAAAATCGGCCTCCATCGCCAAATCTCTCTCCCCAAACCATTACACCGTCGAGGAATCTCCGAAA
CCCTAAATTCCCATTTTCTTCTCAGTCTTCTTTTTTCGATTACTCCTTCAACTTTGTTTTCTTTCAATTTTCTCTTCAACCATGGCCGCTCCTTTGGATATGAGTCTTGA
CGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCGTAGATTCCCCAATCGCGCCGCTAACCGCA
CACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACT
GGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAA
AAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGA
TAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGT
CCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCA
TGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATAGATGCTTTTGGTTCAACGAGCACCCTCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGG
CTATAGTTTTTCCGTGAATTGGTTTGAATTTCTTTACAGCTTTTGGGCTTTCTATTGTTAGCTTTCGTATGACTTCAGCACGGTAATGTAATTGATGAACAGTAGTCACT
GTGTACTCTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTTCTATTTCCCTTAGCCTGATCACATCTGCAAGGGTGACATTGGT
TGGAATAAAACCCTGGCTGCTAATTATACATCAAATGAGTTGCGGTTCCCCATTGAGGGAACCTCAACTCAATAAATCTAATATGTAAGGCATTGAACCGAGAGTTGGCT
AACGTGCTAAAAGATGAACAGTCTTCATAGCTATGGGATCCGACTCGAGGCGAATGAAATTAAGAAATTTGCAAGATGAATAAGCCTTTGTTGGTGTATGGAATCTTTGC
CTGCGTTTTATAGTAAAAATGCCTGATAATAGGTGAGATATCATTATTTTAAAGTAATTGTCCAAATGTATGCAACGTGGTGGTGGTATTCTACTGCTGTGCTTGTGGAG
CGAATCCGCTGAGCAGTTTGCCGCAACTCAGAGGCCTTCATTTGAGGTACAATACCATCACTGTTGAGGGACAGTATCAAGTTTTTATACTGCTGAGTGCTAGTCTTGCA
ACATGATCTCCTTCATTAGACTATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGGTAAAAACTTGGTCTCTTCGGAATCATATTCAATGCATTTACATTTGT
TTGAATATTTGAAAACAACCTGCCTGTGGATTGAGACGAATATGTGTAGGGGTAAGGAGTAATGCCATTGGATTTTCATATGATTATTTTCACTGACATATAGTATCAAT
AGCGTAGATAGGTATGTTGATATCACCTTCTTCATATTTCCATACTCCCCTTCGATTTAAATTTGGACCAGTTTTGATGGTTTATTTGTAAAAGCTATAATGTGTATGTC
AATATCAATTTTGACTGAATGTGGTTGTTTATATAGATAATGGGGG
Protein sequenceShow/hide protein sequence
MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGD
MKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAE
DLDADLEKYHAESMQIN