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CSPI06G14750 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G14750
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S21
Genome locationChr6:12862965..12865180
RNA-Seq ExpressionCSPI06G14750
SyntenyCSPI06G14750
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]2.8e-3596.34Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]9.7e-3697.56Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]6.3e-3595.12Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138832.1 40S ribosomal protein S21-2-like [Momordica charantia]2.2e-3596.34Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]8.2e-3593.9Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHD3 40S ribosomal protein S214.7e-3697.56Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A0A0L7W3 40S ribosomal protein S211.4e-3596.34Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A1S4DSM1 40S ribosomal protein S211.4e-3596.34Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A5D3CXC9 40S ribosomal protein S211.4e-3596.34Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A6J1CCB6 40S ribosomal protein S211.0e-3596.34Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPR  SATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S213.0e-3279.27Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEG++ +LY+PR  SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+KAEV+QQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q3E902 40S ribosomal protein S21-29.5e-3482.72Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEG++TELYIPR  SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q41852 40S ribosomal protein S213.4e-3177.78Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEGK  +LY+PR  SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKKAE++Q
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q9M337 40S ribosomal protein S21-11.0e-3278.05Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q9SMI2 40S ribosomal protein S214.9e-2265.33Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPR  SATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e7.4e-3478.05Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT3G53890.2 Ribosomal protein S21e7.4e-3478.05Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPR  SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT5G27700.1 Ribosomal protein S21e6.7e-3582.72Show/hide
Query:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEG++TELYIPR  SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  MQNEEGKITELYIPRN-SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAACTCTGCCACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCA
CTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGA
AGAAAGCCGAAGTTCGCCAACAGTAG
mRNA sequenceShow/hide mRNA sequence
TCCTTACCTTTGCTGCCGACTGGTATTAACTATTGGACTTTTTCCCGATTCCTCTAGCTGTTTGTTCATTCGTATGTGTGTTAGAAGTTAAATTTCTTGGCGTTAATTCA
TCGTTTACTTGCCGAAGCAGGTTTTTATTAGATTTTTGATCAAACATCAAAGCCAAAATGCAGAACGAAGAAGGAAAGATTACCGAGCTTTACATTCCTAGGAACTCTGC
CACAAATCGACTCATTACTTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGGCACTTGGACGAGAATGGCATCTACACAGGCCAATTCTCCACTTTTGCTCTCTGCG
GTTTCATCCGTGCTCAGGGAGATGCAGACAGTGCATTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATCCAAACCTTCTTCTACTTGAAA
TATTATGTTTCTAATTAAGTTAGTGTTTCATTGAGAATTTATGAATATTGAGAGAGCCTAGCCTGCCTTTTGCTGCTAAAATTTGTAGTTTTTGTTGGAATCTTCATGTG
GTGAAGCTGGTTTTTGATAATTTCTTCGTGGATTCATATTTGCGCTCTTCGGTTAATCCATATTTTTCTAGCACTTGGGGATTTTTTTCCTCTTTTAAAATTAAAAGTTT
TACTTTCTAACAAGACAGTCAGTAGTAGTGAAAGCAGGAAACGATCTTGTTTCTTGCAATCAAATTTTGATTATTTGAGTTTACTAGTAGTAATATTGTCCAGATTTTAG
AATGGTACTTTTTATCATTCAGTCTTTGGTTTTTCTTGATTATGCACTTGTTTACTGCAGTTTTTATGACGAACAACTAATATAAATTACTATTCTGAT
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRNSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ