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CSPI06G15100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G15100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 1
Genome locationChr6:13269771..13271224
RNA-Seq ExpressionCSPI06G15100
SyntenyCSPI06G15100
Gene Ontology termsGO:0051641 - cellular localization (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR009395 - Biogenesis of lysosome-related organelles complex 1 subunit 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059955.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis melo var. makuwa]1.2e-5492.86Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        MKSS GQSRPDLPV PNR KFQS+TERL+ADVGGLE SLLQMV+DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
         TTIARFTKQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

XP_008463815.1 PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis melo]1.2e-5492.86Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        MKSS GQSRPDLPV PNR KFQS+TERL+ADVGGLE SLLQMV+DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
         TTIARFTKQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

XP_011657181.1 biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X1 [Cucumis sativus]7.9e-5998.41Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        M+SSSGQSRPDLPV PNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
        GTTIARFTKQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

XP_031742805.1 biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X2 [Cucumis sativus]7.9e-5998.41Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        M+SSSGQSRPDLPV PNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
        GTTIARFTKQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

XP_038900751.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida]1.7e-5392.06Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        M SSSG SRPDLPVAPNR KFQSETE LTA+VGGLEASLLQMV DH YASLKLRENSEKAKKDAIQKAVRVSDLL DAVNGGVQ+SFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
         TTIARFTKQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

TrEMBL top hitse value%identityAlignment
A0A0A0KEG1 Biogenesis of lysosome-related organelles complex 1 subunit 13.8e-5998.41Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        M+SSSGQSRPDLPV PNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
        GTTIARFTKQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

A0A1S3CKJ9 Biogenesis of lysosome-related organelles complex 1 subunit 15.7e-5592.86Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        MKSS GQSRPDLPV PNR KFQS+TERL+ADVGGLE SLLQMV+DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
         TTIARFTKQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

A0A5A7V238 Biogenesis of lysosome-related organelles complex 1 subunit 15.7e-5592.86Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        MKSS GQSRPDLPV PNR KFQS+TERL+ADVGGLE SLLQMV+DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
         TTIARFTKQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

A0A6J1G8I4 Biogenesis of lysosome-related organelles complex 1 subunit 13.3e-5088.1Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        M S SGQSR  LP   NR KFQSE ERL+ADVGGLEASL QMV DHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
         TTI RF KQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

A0A6J1L4G4 Biogenesis of lysosome-related organelles complex 1 subunit 18.0e-4986.51Show/hide
Query:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL
        M S SGQSR   P A NR KFQSE ERL+ADVGGLEASL QMV DHQYASLKLRENSEKAKKDAIQKA+RVSDLLVDAVNGGVQ SFVNQKLIELEIRAL
Subjt:  MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL

Query:  GTTIARFTKQTDQWLAATHALNTAVK
         TTI RF KQTDQWLAATHALNTAVK
Subjt:  GTTIARFTKQTDQWLAATHALNTAVK

SwissProt top hitse value%identityAlignment
O22929 Biogenesis of lysosome-related organelles complex 1 subunit 11.6e-2557.28Show/hide
Query:  ETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNT
        E E+   +   LE+SLLQ++ D++ +SL+LRE +E+++K+AI+ A R +DLLV AVNGGV+E FVN+K IE EIR L  T+A+F KQTDQWLA THA+N+
Subjt:  ETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNT

Query:  AVK
        AVK
Subjt:  AVK

P78537 Biogenesis of lysosome-related organelles complex 1 subunit 17.8e-0931.58Show/hide
Query:  LLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNTAVKVRSHLES
        L +++ +HQ    + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++ L    A+F KQT QW+      N A+K    +E+
Subjt:  LLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNTAVKVRSHLES

Q0VFD8 Biogenesis of lysosome-related organelles complex 1 subunit 13.8e-1135.79Show/hide
Query:  LLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNTAVKVRSHLES
        L +++ +HQ    + +E  EK +KDAI  A  +++ LVD +N GV +++VNQ+ ++ E++ L T  A+F KQT QW++     N A+K    +E+
Subjt:  LLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNTAVKVRSHLES

Q2NKW0 Biogenesis of lysosome-related organelles complex 1 subunit 17.8e-0931.58Show/hide
Query:  LLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNTAVKVRSHLES
        L +++ +HQ    + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++ L    A+F KQT QW+      N A+K    +E+
Subjt:  LLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNTAVKVRSHLES

Q54VX7 Biogenesis of lysosome-related organelles complex 1 subunit 11.1e-1040Show/hide
Query:  LLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNTAVKVRSHLES
        L ++V DHQ    KL+E +E  KK+AI     V++ L+D+VN GV   F NQK +E E R L    A+F+KQT+QW+      N ++K    +E+
Subjt:  LLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNTAVKVRSHLES

Arabidopsis top hitse value%identityAlignment
AT2G30330.1 GCN5L1 family protein1.1e-2657.28Show/hide
Query:  ETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNT
        E E+   +   LE+SLLQ++ D++ +SL+LRE +E+++K+AI+ A R +DLLV AVNGGV+E FVN+K IE EIR L  T+A+F KQTDQWLA THA+N+
Subjt:  ETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHALNT

Query:  AVK
        AVK
Subjt:  AVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTTCGTCGGGGCAATCGCGGCCGGACCTCCCGGTAGCGCCTAATCGCGTCAAGTTTCAATCGGAGACGGAGAGATTGACCGCCGATGTAGGTGGATTGGAAGC
TTCATTGCTTCAGATGGTCACTGATCATCAGTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAGGCGAAGAAAGATGCTATACAGAAGGCGGTACGCGTATCGGATC
TTTTAGTTGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTAGGGACTACGATTGCAAGATTTACGAAGCAA
ACCGATCAATGGCTCGCCGCCACTCACGCTTTGAACACTGCTGTTAAGGTTCGTTCTCATTTGGAGAGCAACTACTGA
mRNA sequenceShow/hide mRNA sequence
GGAATAAAAAGGTAATTTTGCATTAAGAAAGATTTTTGTTATATTTTTTGGACAGATCAACCAACAAATTGAAATAAGAAGATGGGCGTGAAATGTTAATACAGAATATT
TCGCGGGGCGAACATGAAATCTTCGTCGGGGCAATCGCGGCCGGACCTCCCGGTAGCGCCTAATCGCGTCAAGTTTCAATCGGAGACGGAGAGATTGACCGCCGATGTAG
GTGGATTGGAAGCTTCATTGCTTCAGATGGTCACTGATCATCAGTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAGGCGAAGAAAGATGCTATACAGAAGGCGGTA
CGCGTATCGGATCTTTTAGTTGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTAGGGACTACGATTGCAAG
ATTTACGAAGCAAACCGATCAATGGCTCGCCGCCACTCACGCTTTGAACACTGCTGTTAAGGTTCGTTCTCATTTGGAGAGCAACTACTGAATTTCAAGAAAACACTGCA
TTTTTATTTTTAGCTGTACATCTGAAATTTAATATGTGAATTCAGCATTGTTGCGAATCAAAGCCTGCTTAATCTTATTACTGACTGAAGAGTTTAGCAGCGTTGTTGGA
GTCCGCCAATTCAGTTTTCCAGAACTCTTAAACTTTTCAAGTCAATTCAATGATGTTGAGATGGTATTTGAGCTTGACGGATTACATTGGGGCGCTGTTGATATTGGATA
TGATACTACTTAGTAACTACATTTGATGTTGAGTCTAGATGTTTACCTATGGCTTCAATGCTGCCCATCTGTTCCTATTAAGAGTTTGGGGCCTATTCGACATTGATCTG
TTGTGTTTGTTTTTGGTGTATTTTTAGTTATGTTATTTATATTCTTAGTTTTGGTTAAAACTTTGTATGTTAAATTCATAGCACGGTTAGTGTTGTTCAGACTCGGTTGC
CAAGCGGTATCTTCAAAACCAGCCCCACTGTACTCCTCATATCAATAGAAATATGGATAGTTGCAGTTCCTGAAACTTAGGTTAGGGCTAGTTTGCATTTGTTTTTTGCT
AGTCTGCTACTTAAGACAACTTAAGCTATTTATTATTCATTTTAAAATTTTAAGTGGGGTGTAACAATGGGATTTGAGGGAATGAATTCAAGTCATTGTGGCCACTTTCA
AGGATTTAATACCCTACAATTTCCGTTGGCAACCAAATGTAGTAAAGCCAAATGATTGCCCCATGAGAATAGTTGAGGTGCACTGAAGTTAGTATGGACAATGGACACTC
ATGGATG
Protein sequenceShow/hide protein sequence
MKSSSGQSRPDLPVAPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQ
TDQWLAATHALNTAVKVRSHLESNY