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CSPI06G15190 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G15190
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionpentatricopeptide repeat-containing protein At3g18110, chloroplastic
Genome locationChr6:13359669..13362512
RNA-Seq ExpressionCSPI06G15190
SyntenyCSPI06G15190
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035564.1 Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.8e-8389.83Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASLQG PESPKSVVLITG+AEYNM+SLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFC DLELKDAPALPE NSMK+IDGCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKK
        VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV ++IKSGKV+RI +IKKR Y+R L+A+KK
Subjt:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKK

TYK07589.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.4e-8795.48Show/hide
Query:  DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLV
        DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGLV
Subjt:  DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLV

Query:  PAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
        PAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Subjt:  PAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK

XP_008463825.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Cucumis melo]3.8e-8895.51Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
        VPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Subjt:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK

XP_011657187.1 pentatricopeptide repeat-containing protein At3g18110, chloroplastic isoform X1 [Cucumis sativus]5.1e-93100Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
        VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
Subjt:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK

XP_038901451.1 pentatricopeptide repeat-containing protein At3g18110, chloroplastic isoform X1 [Benincasa hispida]7.7e-8994.94Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASLQGFPESPKSVVLITGTAEYNM+SLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPE NSMK+IDGCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
        VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV Q+IKSGKV+RI KIKKRAYYRRLDA+KKK
Subjt:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK

TrEMBL top hitse value%identityAlignment
A0A0A0KHH7 Uncharacterized protein1.4e-96100Show/hide
Query:  MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGC
        MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGC
Subjt:  MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGC

Query:  FIRRGLVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
        FIRRGLVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
Subjt:  FIRRGLVPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK

A0A1S3CKK9 pentatricopeptide repeat-containing protein At3g18110, chloroplastic1.8e-8895.51Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
        VPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Subjt:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK

A0A5A7UY21 Pentatricopeptide repeat-containing protein1.8e-8895.51Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
        VPAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Subjt:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK

A0A5D3CB97 Pentatricopeptide repeat-containing protein7.0e-8895.48Show/hide
Query:  DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLV
        DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVI+GCFIRRGLV
Subjt:  DASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLV

Query:  PAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK
        PAFKDIT RLGFVRPKKFSRLALLPDEKRDKVI+ADLEGRKEKLEKV QLI+SGK KRI KIKKRAYYRRLDALKKK
Subjt:  PAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK

A0A6J1H2M4 pentatricopeptide repeat-containing protein At3g18110, chloroplastic1.4e-8389.83Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASLQG PESPKSVVLITG+AEYNM+SLNSTLKVCLWEMGSPFLPCRTR GLLIAKAHSLRMWLKDSSFC DLELKDAPALPE NSMK+IDGCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKK
        VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV ++IKSGKV+RI +IKKR Y+R L+A+KK
Subjt:  VPAFKDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKK

SwissProt top hitse value%identityAlignment
Q5G1S8 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic5.8e-6379.19Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASL+G+PESPKSVVLITGTAEYN ISL+ TLK CLWEMGSPFLPC+TR GLL+AKAHSLRMWLKDS FC DLELKD+ +LPE NSM +IDGCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERL-GFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV
        VPAF  I ERL GFV PKKFSRLALLPDE R++VIK D+EG ++KLEK+
Subjt:  VPAFKDITERL-GFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV

Arabidopsis top hitse value%identityAlignment
AT3G18110.1 Pentatricopeptide repeat (PPR) superfamily protein4.1e-6479.19Show/hide
Query:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL
        QDASL+G+PESPKSVVLITGTAEYN ISL+ TLK CLWEMGSPFLPC+TR GLL+AKAHSLRMWLKDS FC DLELKD+ +LPE NSM +IDGCFIRRGL
Subjt:  QDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGL

Query:  VPAFKDITERL-GFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV
        VPAF  I ERL GFV PKKFSRLALLPDE R++VIK D+EG ++KLEK+
Subjt:  VPAFKDITERL-GFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCATGTTGTTCCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGATTTCACTCAATAG
CACACTGAAAGTATGTCTTTGGGAGATGGGATCTCCTTTTCTACCTTGTAGAACACGTGGAGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACT
CCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCTCTTCCGGAATTTAATTCGATGAAGGTAATTGATGGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTC
AAGGACATAACTGAAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGGTTGGCTTTACTCCCTGATGAAAAGAGGGATAAGGTCATTAAAGCTGATTTAGAAGGTAG
GAAAGAGAAGCTTGAAAAAGTAACACAACTTATCAAGTCAGGGAAGGTGAAGAGGATAATGAAGATTAAAAAGAGGGCCTACTATCGTAGACTCGATGCTCTAAAGAAAA
AATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACCATGTTGTTCCAGGATGCATCATTGCAAGGTTTTCCAGAATCTCCAAAATCAGTTGTTCTGATCACTGGAACAGCAGAATATAACATGATTTCACTCAATAG
CACACTGAAAGTATGTCTTTGGGAGATGGGATCTCCTTTTCTACCTTGTAGAACACGTGGAGGTCTTCTTATAGCAAAAGCTCACTCTCTCAGGATGTGGCTAAAAGACT
CCTCTTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCTCTTCCGGAATTTAATTCGATGAAGGTAATTGATGGATGCTTCATAAGACGAGGTCTTGTTCCTGCATTC
AAGGACATAACTGAAAGATTGGGATTTGTGAGGCCTAAGAAATTCTCTAGGTTGGCTTTACTCCCTGATGAAAAGAGGGATAAGGTCATTAAAGCTGATTTAGAAGGTAG
GAAAGAGAAGCTTGAAAAAGTAACACAACTTATCAAGTCAGGGAAGGTGAAGAGGATAATGAAGATTAAAAAGAGGGCCTACTATCGTAGACTCGATGCTCTAAAGAAAA
AATAGAAAACTTTAGATGGTATAGATTATGGTAATCAAGTTATTCGTTTCTTGGCCCCTTATCATTGCTAGCCATGAACGACAACTTCAACATTACTTTCAAATTCCAAC
AAAGTACCCTCTCTACACAACTTGGCGTTGATACAAAACTTGTGCCATTTATTTTCATACAGTTGATCCTCTTGCAAGCTGAAGAATTGAAAAAACAAAAAGGTTATGTA
TTCCTCAGCAATGTATTCTCACTAAGAGCTTGCCAAAATTATATCAGAACATCATTCATGAGACCATTATACCATGTGCTATACGTTGGAGGAAAAATGAAAGGACCTTT
ATGATCTTTATAGACAAGGATTTGTACCATTTCATTGTTCTGCACTAGAGAAATTGAAATCTGGAAGACGACATTGTGAAATATTTGGGACGATGGTAGGGGATCATTTG
TTTGCATGGTAAAGTTGCAATCAAGGGGCAACCACAGGCACTTCAAGCGGCAGTCAAACGCAGGCATGGATGAAACGAACTCGTATATTGGGTTCTGCTCCTTTCAGTTC
TTTTAGAGAAGGAAAGACGGATGCTCAACTAAGCTCCCTATGTTCTTCTGCTTGCAGTTGATTGTTGGCGGTATATTTTGGTCAACCTCTACCTGCTTCCAAACATAAAA
ACTAAAATGTGCTCAACTTAGAAGGCCTTTGACTCCGTGTTTGAGTGTAGGAGTTGAAAAATGTGAAGTTGTGAACTCAATTTTCTGTTGGTTCAAGGACTTCATGGACC
TTACACCAGGTGTACATAAGTAGGATTGAATCCATAAATTATGGATCAATTCAAAGTCTAGGGTTGACAAAAACTGAAGAAATATTTAGACAAATCACTTAGTTTAGACA
TGATTTTCC
Protein sequenceShow/hide protein sequence
MSTMLFQDASLQGFPESPKSVVLITGTAEYNMISLNSTLKVCLWEMGSPFLPCRTRGGLLIAKAHSLRMWLKDSSFCLDLELKDAPALPEFNSMKVIDGCFIRRGLVPAF
KDITERLGFVRPKKFSRLALLPDEKRDKVIKADLEGRKEKLEKVTQLIKSGKVKRIMKIKKRAYYRRLDALKKK