CuGenDBv2

Gene ID	CSPI06G15240
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Isocitrate dehydrogenase [NADP]
Genome location	Chr6:13417350..13417616
RNA-Seq Expression	CSPI06G15240
Synteny	CSPI06G15240
Gene Ontology terms	GO:0006099 - tricarboxylic acid cycle (biological process) GO:0006102 - isocitrate metabolic process (biological process) GO:0006739 - NADP metabolic process (biological process) GO:0005739 - mitochondrion (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004450 - isocitrate dehydrogenase (NADP+) activity (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR004790 - Isocitrate dehydrogenase NADP-dependent IPR024084 - Isopropylmalate dehydrogenase-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5728135.1 isocitrate dehydrogenase [Tripterygium wilfordii]

9.9e-26

79.73

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVHKKGGETSTN+I SIFAWSRGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

KAF5728156.1 isocitrate dehydrogenase [Tripterygium wilfordii]

9.9e-26

79.73

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVHKKGGETSTN+I SIFAWSRGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

TYI93901.1 hypothetical protein E1A91_D02G166900v1 [Gossypium mustelinum]

9.9e-26

79.73

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VTQHFRVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

XP_010470465.1 PREDICTED: cytosolic isocitrate dehydrogenase [NADP]-like isoform X2 [Camelina sativa]

7.6e-26

70.93

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGLLTGLNEMTMLVS
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVH+KGGETSTN+I SIFAWSRGL   L +    VS
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGLLTGLNEMTMLVS

XP_038692058.1 isocitrate dehydrogenase [NADP]-like [Tripterygium wilfordii]

9.9e-26

79.73

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVHKKGGETSTN+I SIFAWSRGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

TrEMBL top hits

e value

%identity

Alignment

A0A078JMJ1 BnaAnng25850D protein

4.8e-26

78.38

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++YVGDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

A0A5D2VWW1 Isocitrate dehydrogenase (NADP(+))

4.8e-26

79.73

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VTQHFRVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

A0A6J1JZB7 Isocitrate dehydrogenase [NADP]

6.3e-26

79.73

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+HFRVH+KGGETSTN+I SIFAWSRGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

A0A7J7C2I1 Isocitrate dehydrogenase [NADP]

4.8e-26

79.73

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVHKKGGETSTN+I SIFAWSRGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

A0A7J7C320 Isocitrate dehydrogenase [NADP]

4.8e-26

79.73

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVHKKGGETSTN+I SIFAWSRGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

SwissProt top hits

e value

%identity

Alignment

P50217 Isocitrate dehydrogenase [NADP]

8.4e-28

77.03

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

P50218 Isocitrate dehydrogenase [NADP]

8.4e-28

77.03

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+H+RVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

Q06197 Isocitrate dehydrogenase [NADP]

3.8e-28

78.38

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+HFRVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

Q40345 Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)

3.8e-28

78.38

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+HFRVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

Q9SRZ6 Cytosolic isocitrate dehydrogenase [NADP]

3.8e-28

78.38

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+HFRVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G54340.1 isocitrate dehydrogenase

1.0e-28

75.68

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQG+GSLG+M  VLVC +GKTI  EA HG VT+H+RVH+KGGETSTN+I SIFAWSRGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase

2.7e-29

78.38

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSDFLAQGFGSLGLM  VLVC +GKTI  EA HG VT+HFRVH+KGGETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

AT5G14590.1 Isocitrate/isopropylmalate dehydrogenase family protein

1.4e-25

70.27

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Query:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL
        WAC++Y GDVQSD LAQGFGSLGLM  VL+ ++GKT+  EA HG VT+HFR+H+KG ETSTN+I SIFAW+RGL
Subjt:  WACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGL

Sequences

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CDS sequence

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ATGTCCTGGGCATGCGAGAGCTATGTTGGAGATGTTCAGAGTGATTTCTTAGCTCAAGGATTTGGATCTCTTGGGTTGATGATCTATGTATTGGTTTGTTCTAATGGAAA
GACAATTGTCGTAGAAGCAACTCATGGCATTGTTACACAACATTTTAGGGTTCATAAAAAAGGTGGTGAAACTAGTACAAACAACATAACATCTATCTTTGCTTGGTCTC
GTGGCCTTCTCACAGGGCTAAATGAGATGACAATGCTAGTCTCTTAG

mRNA sequence

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Protein sequence

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MSWACESYVGDVQSDFLAQGFGSLGLMIYVLVCSNGKTIVVEATHGIVTQHFRVHKKGGETSTNNITSIFAWSRGLLTGLNEMTMLVS

CSPI06G15240 (gene) of Cucumber (PI 183967) v1 genome