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CSPI06G15250 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G15250
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionIsocitrate dehydrogenase [NADP]
Genome locationChr6:13417777..13418410
RNA-Seq ExpressionCSPI06G15250
SyntenyCSPI06G15250
Gene Ontology termsGO:0006099 - tricarboxylic acid cycle (biological process)
GO:0006102 - isocitrate metabolic process (biological process)
GO:0043229 - intracellular organelle (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0004450 - isocitrate dehydrogenase (NADP+) activity (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR004790 - Isocitrate dehydrogenase NADP-dependent
IPR024084 - Isopropylmalate dehydrogenase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0538727.1 hypothetical protein BDA96_03G261500 [Sorghum bicolor]7.0e-3466.09Show/hide
Query:  MAFQKIKVANPIVEMDGDEITQT-------KPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQ-EIEVFNFTGAGGVVLAMYNTYEFIHSSVDASM
        MAF+KIKV+NPIVEMDGDE+T+        KPI IGRHAFGDQYR T+ V++GP KLK +F+G++ Q ++EVFNFTGAGGV L+MYNT E I +  +ASM
Subjt:  MAFQKIKVANPIVEMDGDEITQT-------KPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQ-EIEVFNFTGAGGVVLAMYNTYEFIHSSVDASM

Query:  ATAYEMKWPLYLSTK
         TAYE KWPLYLSTK
Subjt:  ATAYEMKWPLYLSTK

NP_001295854.1 cytosolic isocitrate dehydrogenase [Cucumis sativus]4.7e-3080Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVIRGP KLK +F+GQ+ QEIEVFNFTGAGGV LAMYNT E I S  +ASMATAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

XP_008463131.1 PREDICTED: isocitrate dehydrogenase [NADP] isoform X1 [Cucumis melo]1.0e-2978.82Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVI+GP KLK +F+GQ+ QEIEVFNFTGAGGV LAMYNT E I S  +ASMATAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

XP_011655148.1 cytosolic isocitrate dehydrogenase isoform X2 [Cucumis sativus]4.7e-3080Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVIRGP KLK +F+GQ+ QEIEVFNFTGAGGV LAMYNT E I S  +ASMATAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

XP_031740810.1 cytosolic isocitrate dehydrogenase isoform X1 [Cucumis sativus]4.7e-3080Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVIRGP KLK +F+GQ+ QEIEVFNFTGAGGV LAMYNT E I S  +ASMATAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

TrEMBL top hitse value%identityAlignment
A0A0A0KRB4 Isocitrate dehydrogenase [NADP]2.3e-3080Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVIRGP KLK +F+GQ+ QEIEVFNFTGAGGV LAMYNT E I S  +ASMATAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

A0A1S4E429 Isocitrate dehydrogenase [NADP]5.1e-3078.82Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVI+GP KLK +F+GQ+ QEIEVFNFTGAGGV LAMYNT E I S  +ASMATAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

A0A1W0VYR0 Isocitrate dehydrogenase (NADP(+))3.4e-3466.09Show/hide
Query:  MAFQKIKVANPIVEMDGDEITQT-------KPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQ-EIEVFNFTGAGGVVLAMYNTYEFIHSSVDASM
        MAF+KIKV+NPIVEMDGDE+T+        KPI IGRHAFGDQYR T+ V++GP KLK +F+G++ Q ++EVFNFTGAGGV L+MYNT E I +  +ASM
Subjt:  MAFQKIKVANPIVEMDGDEITQT-------KPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQ-EIEVFNFTGAGGVVLAMYNTYEFIHSSVDASM

Query:  ATAYEMKWPLYLSTK
         TAYE KWPLYLSTK
Subjt:  ATAYEMKWPLYLSTK

A0A5A7VEU1 Isocitrate dehydrogenase [NADP]5.1e-3078.82Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVI+GP KLK +F+GQ+ QEIEVFNFTGAGGV LAMYNT E I S  +ASMATAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

Q8RW69 Isocitrate dehydrogenase [NADP]2.3e-3080Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVIRGP KLK +F+GQ+ QEIEVFNFTGAGGV LAMYNT E I S  +ASMATAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

SwissProt top hitse value%identityAlignment
P50217 Isocitrate dehydrogenase [NADP]3.1e-2462.5Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIF---KGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVI+G  KLK +F      +  E EV+NFTGAGGV L+MYNT E + S  +ASM  A++ KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIF---KGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

P50218 Isocitrate dehydrogenase [NADP]1.4e-2463.64Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQ---KMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+TVI+G  KLK +F  +   +  E EV+NFTGAGGV L+MYNT E + S  +ASM  AY+ KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQ---KMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

Q06197 Isocitrate dehydrogenase [NADP]8.1e-2569.32Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIF--KGQ-KMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TK I IGRHAFGDQYR T+TVI+G  KLK +F  +GQ +  E EVFNFTG GGV LAMYNT E I S  +ASMATA E KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIF--KGQ-KMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

Q06197 Isocitrate dehydrogenase [NADP]3.0e-0390.48Show/hide
Query:  AFQKIKVANPIVEMDGDEITQ
        AFQKIKVANPIVEMDGDE+T+
Subjt:  AFQKIKVANPIVEMDGDEITQ

Q40345 Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)1.6e-2567.05Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIF--KGQ-KMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T++VI+GP KLK +F  +GQ +  ++EV+NFTG GGV LAMYNT E I S  +ASMA A E KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIF--KGQ-KMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

Q40345 Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)2.3e-0386.36Show/hide
Query:  MAFQKIKVANPIVEMDGDEITQ
        M FQKIKVANPIVEMDGDE+T+
Subjt:  MAFQKIKVANPIVEMDGDEITQ

Q9SRZ6 Cytosolic isocitrate dehydrogenase [NADP]2.1e-2567.44Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQK-MQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+ VI+GP KL   F+G+    E EVF FTG GGV +AMYNT E I +  DASM TAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQK-MQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

Q9SRZ6 Cytosolic isocitrate dehydrogenase [NADP]1.8e-0386.36Show/hide
Query:  MAFQKIKVANPIVEMDGDEITQ
        MAF+KIKVANPIVEMDGDE+T+
Subjt:  MAFQKIKVANPIVEMDGDEITQ

Arabidopsis top hitse value%identityAlignment
AT1G54340.1 isocitrate dehydrogenase5.4e-2461.36Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFK---GQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+ ++  P KLK +F+     +  E EVFNFTG GGV LAMYNT E I +  ++SM TAY+ KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFK---GQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

AT1G54340.1 isocitrate dehydrogenase2.3e-0372.73Show/hide
Query:  MAFQKIKVANPIVEMDGDEITQ
        M F+KIKV NP+VEMDGDE+T+
Subjt:  MAFQKIKVANPIVEMDGDEITQ

AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase1.5e-2667.44Show/hide
Query:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQK-MQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        TKPI IGRHAFGDQYR T+ VI+GP KL   F+G+    E EVF FTG GGV +AMYNT E I +  DASM TAYE KWPLYLSTK
Subjt:  TKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQK-MQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK

AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase1.2e-0486.36Show/hide
Query:  MAFQKIKVANPIVEMDGDEITQ
        MAF+KIKVANPIVEMDGDE+T+
Subjt:  MAFQKIKVANPIVEMDGDEITQ

AT5G14590.1 Isocitrate/isopropylmalate dehydrogenase family protein4.3e-2158.62Show/hide
Query:  KPIYIGRHAFGDQYRTTNTVIRGPRKLKFIF---KGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK
        KPI IGRHAFGDQYR T+TVI+GP KLK +F    G    E++V++F G  GV LAMYN  E I +  ++SMA A   KWPLYLSTK
Subjt:  KPIYIGRHAFGDQYRTTNTVIRGPRKLKFIF---KGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCCAGAAGATCAAGGTCGCCAATCCCATCGTTGAGATGGACGGAGATGAAATAACTCAAACGAAGCCTATCTATATTGGAAGACATGCTTTTGGTGACCAATA
CAGAACTACTAATACAGTCATCAGAGGACCTCGGAAATTGAAATTTATTTTCAAGGGGCAGAAGATGCAAGAGATAGAGGTTTTCAATTTCACTGGTGCTGGAGGAGTTG
TGTTAGCCATGTATAACACATATGAGTTCATCCACTCTTCTGTTGATGCATCAATGGCCACTGCTTATGAAATGAAATGGCCTCTTTACCTTAGCACAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCCAGAAGATCAAGGTCGCCAATCCCATCGTTGAGATGGACGGAGATGAAATAACTCAAACGAAGCCTATCTATATTGGAAGACATGCTTTTGGTGACCAATA
CAGAACTACTAATACAGTCATCAGAGGACCTCGGAAATTGAAATTTATTTTCAAGGGGCAGAAGATGCAAGAGATAGAGGTTTTCAATTTCACTGGTGCTGGAGGAGTTG
TGTTAGCCATGTATAACACATATGAGTTCATCCACTCTTCTGTTGATGCATCAATGGCCACTGCTTATGAAATGAAATGGCCTCTTTACCTTAGCACAAAATAA
Protein sequenceShow/hide protein sequence
MAFQKIKVANPIVEMDGDEITQTKPIYIGRHAFGDQYRTTNTVIRGPRKLKFIFKGQKMQEIEVFNFTGAGGVVLAMYNTYEFIHSSVDASMATAYEMKWPLYLSTK