; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G15410 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G15410
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr6:13628330..13629040
RNA-Seq ExpressionCSPI06G15410
SyntenyCSPI06G15410
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]1.2e-8382.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPGPDG+SVGF+KGAW+VVGEDFC+A+LHFFET Y P GVN TAIT I K  G  RLEDFRPISCCNV+YKCIS+ILADRLR+WLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FI  RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRAC+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-8482.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPGPDG+SVGFFKGAW+V+GEDFCDA+LHFFET Y P GVN TAIT I K NG  RLEDFRPISCCNV+YKCIS+ILADRLRVWLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FIL RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNWDFLFGL I+I TPLKFVSWI AC+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.8e-8382.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPG DG+SVGFFKGAW VVGEDFCDA+LHFFET Y P GVN TAIT I K NG  RLEDFRPISCCNV+YKCIS+IL DRL VWLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FIL RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNW+FLFGLLIAIGTPLKFVSWIR C+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-8482.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPGPDG+SVGFFKGAW+V+GEDFCDA+LHFFET Y P GVN TAIT I K NG  RLEDFRPISCCNV+YKCIS+ILADRLRVWLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FIL RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNWDFLFGL I+I TPLKFVSWI AC+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]1.9e-8483.52Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MD GKAPGPDGYSVGFFKGAWTVV E FCD +LHFFETNYFP GVNTTAIT I KRNG  RLEDF PISCC+VIYKCISRILADRLRVWLPSF+SGNQ  
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FI  RSIIDNILL Q+LVG YH+   KP+CTMKVDL KAYDSVNWDFLFGLLIAIGTPL+FVSW+RAC+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TZS0 Reverse transcriptase domain-containing protein6.0e-8482.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPGPDG+SVGF+KGAW+VVGEDFC+A+LHFFET Y P GVN TAIT I K  G  RLEDFRPISCCNV+YKCIS+ILADRLR+WLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FI  RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRAC+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

A0A5A7U8G1 Non-LTR retroelement reverse transcriptase-like protein1.3e-8382.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPG DG+SVGFFKGAW VVGEDFCDA+LHFFET Y P GVN TAIT I K NG  RLEDFRPISCCNV+YKCIS+IL DRL VWLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FIL RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNW+FLFGLLIAIGTPLKFVSWIR C+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

A0A5A7UP65 Reverse transcriptase1.6e-8482.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPGPDG+SVGFFKGAW+V+GEDFCDA+LHFFET Y P GVN TAIT I K NG  RLEDFRPISCCNV+YKCIS+ILADRLRVWLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FIL RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNWDFLFGL I+I TPLKFVSWI AC+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein1.3e-8382.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPG DG+SVGFFKGAW VVGEDFCDA+LHFFET Y P GVN TAIT I K NG  RLEDFRPISCCNV+YKCIS+IL DRL VWLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FIL RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNW+FLFGLLIAIGTPLKFVSWIR C+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

A0A5D3D7P6 Reverse transcriptase1.6e-8482.42Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        MDSGKAPGPDG+SVGFFKGAW+V+GEDFCDA+LHFFET Y P GVN TAIT I K NG  RLEDFRPISCCNV+YKCIS+ILADRLRVWLPSFIS NQS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
        FIL RSII+NILL Q+LVGGYH+N+ KP+CT+KVDLQKAYDSVNWDFLFGL I+I TPLKFVSWI AC+TS MFSIMINGSL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

SwissProt top hitse value%identityAlignment
P08548 LINE-1 reverse transcriptase homolog3.2e-1027.23Show/hide
Query:  KAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFET----NYFPHGVNTTAITFIRK-RNGVARLEDFRPISCCNVIYKCISRILADRLRVWLP--------
        K+PGPDG++  F++       E+    +L+ F+        P+      IT I K      R E++RPIS  N+  K +++IL +R++  +         
Subjt:  KAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFET----NYFPHGVNTTAITFIRK-RNGVARLEDFRPISCCNVIYKCISRILADRLRVWLP--------

Query:  SFISGNQSTFILRRSIIDNILLYQDLVGGYHMN--TRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMING
         FI G+Q  F +R+SI  N++         H+N    K    + +D +KA+D++   F+   L  IG    F+  I A  +    +I++NG
Subjt:  SFISGNQSTFILRRSIIDNILLYQDLVGGYHMN--TRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMING

P11369 LINE-1 retrotransposable element ORF2 protein1.9e-1026.98Show/hide
Query:  KAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFE----TNYFPHGVNTTAITFIRK-RNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPS-------
        K+PGPDG+S  F++       ED    +   F         P+      IT I K +    ++E+FRPIS  N+  K +++ILA+R++  + +       
Subjt:  KAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFE----TNYFPHGVNTTAITFIRK-RNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPS-------

Query:  -FISGNQSTFILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMING
         FI G Q  F +R+SI  N++ Y + +        K    + +D +KA+D +   F+  +L   G    +++ I+A  +  + +I +NG
Subjt:  -FISGNQSTFILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMING

P14381 Transposon TX1 uncharacterized 149 kDa protein6.1e-1727.47Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST
        M   K+PG DG ++ FF+  W  +G DF   +   F+    P       ++ + K+  +  ++++RP+S  +  YK +++ ++ RL+  L   I  +QS 
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQST

Query:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL
         +  R+I DN+ L +DL+  +   T      + +D +KA+D V+  +L G L A     +FV +++    S    + IN SL
Subjt:  FILRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSL

P16423 Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM5.7e-0727.44Show/hide
Query:  APGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRV---WLPSFISGNQSTFI
        +PGPDG +    K A  V        +         PH +      FI K     R +DFRPIS  +V+ + ++ ILA RL     W P      Q  F+
Subjt:  APGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRV---WLPSFISGNQSTFI

Query:  LRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIR
              DN  +   ++   H + R       +D+ KA+DS++   ++  L A G P  FV +++
Subjt:  LRRSIIDNILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIR

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein6.5e-1445.57Show/hide
Query:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCIS
        M   KAPGPD ++  FF  +W VV +    A+  FF T +     N TAIT I K  GV +L  FRP+SCC V+YK I+
Subjt:  MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCIS

AT4G20520.1 RNA binding;RNA-directed DNA polymerases1.3e-0634.62Show/hide
Query:  LADRLRVWLPSFISGNQSTFILRRSIIDNILLYQDLVGGYHMNTR-KPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTP
        + +RL+  + + I   Q++FI  R   DNI+  Q+ V         K    +K+DL+KAYD + WD+L   LI+ G P
Subjt:  LADRLRVWLPSFISGNQSTFILRRSIIDNILLYQDLVGGYHMNTR-KPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGTGGAAAGGCACCAGGACCTGATGGGTATTCAGTTGGCTTCTTCAAAGGAGCTTGGACGGTGGTTGGGGAGGATTTTTGTGATGCCATCTTACACTTCTTTGA
GACTAATTATTTCCCTCATGGGGTGAATACAACTGCTATTACGTTTATTCGTAAAAGGAATGGTGTTGCTCGGTTGGAGGATTTCAGGCCTATCTCTTGTTGTAATGTTA
TTTACAAGTGTATCTCAAGAATATTGGCTGATAGGCTTCGTGTGTGGCTTCCTTCTTTTATAAGTGGAAATCAATCTACTTTCATCCTTAGGAGGAGTATTATTGATAAT
ATTCTTCTTTATCAGGATCTTGTAGGGGGTTACCATATGAATACAAGAAAACCTCAGTGCACTATGAAGGTTGATCTCCAAAAAGCCTATGATTCTGTCAATTGGGATTT
CCTCTTTGGTCTGTTGATAGCTATTGGCACTCCTTTGAAATTTGTGAGTTGGATTAGAGCATGTATCACATCTCTGATGTTCTCCATTATGATTAATGGATCACTCTATC
TTAGTCCTTTCCTCCCATGCAAAAAAACTTCAAAATATCCATCAATCATAATGGAGAACATTGGAGATGTGATACCTACTCTAATCCAACTCACAAATTTCAAAGGAGTG
CCAATAGCTATCAACAGACCAAAGAGGAAATCCCAATTGACAGAATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGTGGAAAGGCACCAGGACCTGATGGGTATTCAGTTGGCTTCTTCAAAGGAGCTTGGACGGTGGTTGGGGAGGATTTTTGTGATGCCATCTTACACTTCTTTGA
GACTAATTATTTCCCTCATGGGGTGAATACAACTGCTATTACGTTTATTCGTAAAAGGAATGGTGTTGCTCGGTTGGAGGATTTCAGGCCTATCTCTTGTTGTAATGTTA
TTTACAAGTGTATCTCAAGAATATTGGCTGATAGGCTTCGTGTGTGGCTTCCTTCTTTTATAAGTGGAAATCAATCTACTTTCATCCTTAGGAGGAGTATTATTGATAAT
ATTCTTCTTTATCAGGATCTTGTAGGGGGTTACCATATGAATACAAGAAAACCTCAGTGCACTATGAAGGTTGATCTCCAAAAAGCCTATGATTCTGTCAATTGGGATTT
CCTCTTTGGTCTGTTGATAGCTATTGGCACTCCTTTGAAATTTGTGAGTTGGATTAGAGCATGTATCACATCTCTGATGTTCTCCATTATGATTAATGGATCACTCTATC
TTAGTCCTTTCCTCCCATGCAAAAAAACTTCAAAATATCCATCAATCATAATGGAGAACATTGGAGATGTGATACCTACTCTAATCCAACTCACAAATTTCAAAGGAGTG
CCAATAGCTATCAACAGACCAAAGAGGAAATCCCAATTGACAGAATCATAG
Protein sequenceShow/hide protein sequence
MDSGKAPGPDGYSVGFFKGAWTVVGEDFCDAILHFFETNYFPHGVNTTAITFIRKRNGVARLEDFRPISCCNVIYKCISRILADRLRVWLPSFISGNQSTFILRRSIIDN
ILLYQDLVGGYHMNTRKPQCTMKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACITSLMFSIMINGSLYLSPFLPCKKTSKYPSIIMENIGDVIPTLIQLTNFKGV
PIAINRPKRKSQLTES