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CSPI06G15500 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G15500
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA-binding protein 47C'
Genome locationChr6:13778297..13783314
RNA-Seq ExpressionCSPI06G15500
SyntenyCSPI06G15500
Gene Ontology termsGO:0005829 - cytosol (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035127.1 Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-1573.77Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNRYFYSF----SVVKHAAA
        IFVGGLD DVSDEDLKQ FSKFG+++SVKIPIGKGCGF+QF NRY   F    SVVK+AA+
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNRYFYSF----SVVKHAAA

XP_004145357.2 polyadenylate-binding protein RBP47 [Cucumis sativus]1.2e-1390.91Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD DVSDEDLKQAFSKFGDV+SVKIPIGKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

XP_008459212.1 PREDICTED: polyadenylate-binding protein RBP47 [Cucumis melo]5.8e-1388.64Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD DVSDEDLK AFSKFGDV+SVKIPIGKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

XP_031742464.1 uncharacterized protein LOC101217312 [Cucumis sativus]4.6e-7197.87Show/hide
Query:  FSQIEISPKLKTLIPPTKKPSPNAKKPSPDVKKAISGRCPFPSPPSHSRLFTLAPPQPSLPDDKTSSILTYSIRVCHLQSVAISSMFKLLPSPPLPIFVG
        FSQIEISPKLKTLIPPTKKPSPNAKKPSPDVKKAISGRCPFPSPPSHSRLFTLAPPQPSLPDDKTSSILTYSIRVCHLQSVAISSMFKLLPSPPLPIFVG
Subjt:  FSQIEISPKLKTLIPPTKKPSPNAKKPSPDVKKAISGRCPFPSPPSHSRLFTLAPPQPSLPDDKTSSILTYSIRVCHLQSVAISSMFKLLPSPPLPIFVG

Query:  GLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNRY
        GLDYDVSDEDLKQAFSKFGDV+SVKIPIGKGC FLQFTNR+
Subjt:  GLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNRY

XP_038901011.1 polyadenylate-binding protein RBP47 [Benincasa hispida]2.6e-1365.62Show/hide
Query:  HLQSVAISSMFKLLPSPPLPIFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        H   +A+        S    IFVGGLD DVSDEDLKQ FSKFGDV+SVKIPIGKGCGF+QF NR
Subjt:  HLQSVAISSMFKLLPSPPLPIFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

TrEMBL top hitse value%identityAlignment
A0A1S3C9N4 polyadenylate-binding protein RBP472.8e-1388.64Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD DVSDEDLK AFSKFGDV+SVKIPIGKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

A0A5D3CNT4 Polyadenylate-binding protein RBP472.8e-1388.64Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD DVSDEDLK AFSKFGDV+SVKIPIGKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

A0A6J1G6T8 polyadenylate-binding protein RBP47-like8.1e-1384.09Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD DVSDEDLKQ FSKFG+++SVKIPIGKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

A0A6J1KYU5 polyadenylate-binding protein RBP47-like8.1e-1384.09Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD DVSDEDLKQ FSKFG+++SVKIPIGKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

V4V7H8 Uncharacterized protein1.4e-1269.39Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNRYFYSF
        IFVGGLD +V+DEDL+Q FS++G++ SVKIP+GKGCGF+QF NRYFY +
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNRYFYSF

SwissProt top hitse value%identityAlignment
F4I3B3 Polyadenylate-binding protein RBP47A3.5e-1375Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD DV++EDL Q FS FG+V+SVKIP+GKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

Q0WW84 Polyadenylate-binding protein RBP47B6.0e-1372.73Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGG+D DV DEDL+Q FS+FG+V+SVKIP+GKGCGF+QF +R
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

Q9LEB3 Polyadenylate-binding protein RBP473.0e-1268.18Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD +V+DE+L+Q+F++FG+V+SVKIP GKGCGF+QF++R
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

Q9SX79 Polyadenylate-binding protein RBP47C2.1e-1372.73Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD  V+DEDLKQ F++FG+++SVKIP+GKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

Q9SX80 Polyadenylate-binding protein RBP47C'9.2e-1475Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD  V+DEDLKQ FS+FG+++SVKIP+GKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

Arabidopsis top hitse value%identityAlignment
AT1G47490.1 RNA-binding protein 47C1.5e-1472.73Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD  V+DEDLKQ F++FG+++SVKIP+GKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

AT1G47500.1 RNA-binding protein 47C'6.6e-1575Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD  V+DEDLKQ FS+FG+++SVKIP+GKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

AT1G49600.1 RNA-binding protein 47A2.5e-1475Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD DV++EDL Q FS FG+V+SVKIP+GKGCGF+QF NR
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

AT3G19130.1 RNA-binding protein 47B4.2e-1472.73Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGG+D DV DEDL+Q FS+FG+V+SVKIP+GKGCGF+QF +R
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR

AT5G54900.1 RNA-binding protein 45A2.2e-1059.09Show/hide
Query:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR
        IFVGGLD +V+D++LK  F +FG++L VKIP GK CGF+Q+ N+
Subjt:  IFVGGLDYDVSDEDLKQAFSKFGDVLSVKIPIGKGCGFLQFTNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTCCCAAATTGAAATTTCCCCCAAATTAAAAACCCTCATTCCTCCCACGAAGAAGCCATCTCCAAATGCGAAGAAGCCATCTCCAGACGTGAAGAAGGCAATCTCTGG
ACGATGCCCGTTCCCGTCACCGCCCTCTCATTCTCGTCTCTTCACTTTAGCGCCACCGCAACCTTCTCTACCGGACGACAAAACCTCCTCTATTCTAACCTATTCAATTC
GTGTCTGTCATCTCCAATCTGTCGCAATCTCTTCAATGTTCAAATTGTTGCCGTCACCTCCTCTGCCGATATTTGTTGGTGGTCTCGATTATGATGTTAGTGATGAAGAT
TTAAAGCAAGCTTTCTCTAAATTTGGTGACGTTCTCTCTGTGAAAATTCCAATTGGAAAAGGATGTGGATTTTTGCAATTTACTAACAGGTATTTTTATTCTTTTTCTGT
CGTCAAACATGCAGCTGCCAGCTAA
mRNA sequenceShow/hide mRNA sequence
GCTTTTCCCAAATTGAAATTTCCCCCAAATTAAAAACCCTCATTCCTCCCACGAAGAAGCCATCTCCAAATGCGAAGAAGCCATCTCCAGACGTGAAGAAGGCAATCTCT
GGACGATGCCCGTTCCCGTCACCGCCCTCTCATTCTCGTCTCTTCACTTTAGCGCCACCGCAACCTTCTCTACCGGACGACAAAACCTCCTCTATTCTAACCTATTCAAT
TCGTGTCTGTCATCTCCAATCTGTCGCAATCTCTTCAATGTTCAAATTGTTGCCGTCACCTCCTCTGCCGATATTTGTTGGTGGTCTCGATTATGATGTTAGTGATGAAG
ATTTAAAGCAAGCTTTCTCTAAATTTGGTGACGTTCTCTCTGTGAAAATTCCAATTGGAAAAGGATGTGGATTTTTGCAATTTACTAACAGGTATTTTTATTCTTTTTCT
GTCGTCAAACATGCAGCTGCCAGCTAATCTTTATATCTTAAAAGTAATTAGTGGATACAAAATGAGAAGGTCACTGCTCAAGCACAAGTTGGATTGACCCATGAAATAGC
GGTTAGTTTTGGCTTGCCGTAGTAGTTGGCAATATTGGCTCTAAGATTTATGACCTATGTGCCTGTGACTCTTGGGATATTTCGATTAGGTAACTTGCTTTTCTAGAAAA
TTTGTAGGCATGTACTTGTTTTATTATAATAGAGGCAATATTAC
Protein sequenceShow/hide protein sequence
FSQIEISPKLKTLIPPTKKPSPNAKKPSPDVKKAISGRCPFPSPPSHSRLFTLAPPQPSLPDDKTSSILTYSIRVCHLQSVAISSMFKLLPSPPLPIFVGGLDYDVSDED
LKQAFSKFGDVLSVKIPIGKGCGFLQFTNRYFYSFSVVKHAAAS