; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G15760 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G15760
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr6:14133278..14133846
RNA-Seq ExpressionCSPI06G15760
SyntenyCSPI06G15760
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]6.7e-4383Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        MDIW+ IQGVR + SVEDR VWVPGS DSFSIASAWETIRPHSSR GWSGLLW   NIPKHS  AWLAI+DRLGT+DRLS+WDRSIPLSC+LCGGNYESR
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

XP_031737556.1 uncharacterized protein LOC116402448 [Cucumis sativus]1.6e-4182Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        MDIW+RIQGVR +PSVED  V VPGSH+SFSI SA E IRPHSSR GWSGLLWGG NIPKHS   WLAIKDRLGT+DRLSRWD SIPLSCILCG NYESR
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

XP_031745517.1 uncharacterized protein LOC116405878 [Cucumis sativus]4.1e-4887Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        MDIW+R+QGVR +PSVEDR VWVPGSHDSFSI SAWETIRPHSSR GWSGLLWGG NIPKHS CAWLAI+DRLGT+ RLSRWDRSIPLSC+LCGGNYESR
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]2.0e-4786Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        MDIW+R+QGVR +PSVEDR VWV GSHDSFSI SAWETIRPHS R GWSGLLWGG NIPKHS CAWLAI+DRLGT+DRLSRWDRSIPLSC+LCGGNYESR
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]5.7e-3477.91Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSI
        MDIW+R+QGVR +PSVEDR VWVPGSHDSFSI S WETIRPHSSR GWSGLLWGG NIPKHS CAWLAI+DRLGT+    R +R I
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSI

TrEMBL top hitse value%identityAlignment
A0A1S4E258 uncharacterized protein LOC1034968801.7e-2860Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGG
        +D+W+R+Q V    SV DR VW+PG    FSIAS WETIRP   R  W+ LLWGGENIPKHS CAWLAIKD LGT+DRL RWD S+ +      G
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGG

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein9.8e-3263Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        +D+W+R+Q VR   SV DR VWVPG    FSIASA +TIRP   R  W GLLWGG N+PKHS CAWL IK++LGT+DRL RWD S+P+S ILC G  ESR
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

A0A5A7TZS0 Reverse transcriptase domain-containing protein4.0e-3368Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        +D+WER+Q V    SV D  VWVPG    FSIASAWE I P   R  W GLLWGG NIPKHS CAWLAIKDRL T+DRL RWD SIPLSCILC G  ESR
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

A0A5A7V3Z0 Reverse transcriptase domain-containing protein2.9e-2864.13Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCIL
        +D+WER+Q V    SV D  VWVPG    FSIASAWE +RP   R  W GLLWGG NI KH  CAWLAIKDRLGT DRL RWD S+P+ CIL
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCIL

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein1.5e-3264Show/hide
Query:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        +++W+R+Q V    SV D  VWVPG    FSIASAW+ IRP   R  W GLLWGG NIPKHS CAWLAIKDRLGT+DRL RWD S+P+ CILC G  ESR
Subjt:  MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.2e-1133.33Show/hide
Query:  EDRLVWVPGSH---DSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        +D  +W    H   + FS A     + P +    W   +W   ++PKH+   W+   +RL T+DRL  W  SIP  C+LC  + ESR
Subjt:  EDRLVWVPGSH---DSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.5e-1235.16Show/hide
Query:  SNPSVEDRLVWVPGS--HDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        S  ++ED   WV G      FS A  W+ IRP +    W+  +W    +PKH+   W++  DRL T+ RL+ W       C LC    ESR
Subjt:  SNPSVEDRLVWVPGS--HDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.5e-1333.33Show/hide
Query:  EDRLVWVPGSH---DSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        +D  +W    H   + FS    W  + P S    W   +W   ++PKH+   W+   +RL T+DRL  W  SIP  C+LC  + +SR
Subjt:  EDRLVWVPGSH---DSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.5e-1132.18Show/hide
Query:  EDRLVWVPGSHDS---FSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR
        +D  +W  G  ++   FS A+ W  + P   +  W   +W    IPKH+  +W+ I+ RL T+D+L  W   +P  C+LC    E+R
Subjt:  EDRLVWVPGSHDS---FSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESR

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.9e-1339.53Show/hide
Query:  EDRLVW--VPGSH-DSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYES
        +D  +W    GS+  SFS    WE IR HS    W+ ++W  E IP+ SL  W++  +RL T+DRL  W  +IP S +LC    E+
Subjt:  EDRLVW--VPGSH-DSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATTTGGGAAAGGATTCAGGGAGTGAGGTCGAATCCGAGTGTTGAGGATAGGTTGGTCTGGGTGCCAGGGAGTCATGATAGTTTTTCAATCGCCAGTGCGTGGGA
GACTATTCGCCCTCATAGTAGTAGGACTGGTTGGTCCGGTTTACTGTGGGGTGGGGAAAATATTCCTAAGCACTCATTATGTGCTTGGTTGGCCATCAAGGATAGGTTGG
GTACTAAAGATAGGTTAAGTCGGTGGGATAGGTCAATTCCTTTATCATGTATTCTTTGTGGAGGGAACTATGAGTCTCGGTATTGGGAAGGGTGTGAGGAGAAAATTGTG
GCGCCTTCTCTAGTGTGCTACAATTTATTTCATTTGGCAGGAGCGAAATCATCGTCTTCATGGAGGTGCTATTCAGGAGCCTATGGTTATATTCCAGCTCATTCGGTTGT
GTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACATTTGGGAAAGGATTCAGGGAGTGAGGTCGAATCCGAGTGTTGAGGATAGGTTGGTCTGGGTGCCAGGGAGTCATGATAGTTTTTCAATCGCCAGTGCGTGGGA
GACTATTCGCCCTCATAGTAGTAGGACTGGTTGGTCCGGTTTACTGTGGGGTGGGGAAAATATTCCTAAGCACTCATTATGTGCTTGGTTGGCCATCAAGGATAGGTTGG
GTACTAAAGATAGGTTAAGTCGGTGGGATAGGTCAATTCCTTTATCATGTATTCTTTGTGGAGGGAACTATGAGTCTCGGTATTGGGAAGGGTGTGAGGAGAAAATTGTG
GCGCCTTCTCTAGTGTGCTACAATTTATTTCATTTGGCAGGAGCGAAATCATCGTCTTCATGGAGGTGCTATTCAGGAGCCTATGGTTATATTCCAGCTCATTCGGTTGT
GTATTAA
Protein sequenceShow/hide protein sequence
MDIWERIQGVRSNPSVEDRLVWVPGSHDSFSIASAWETIRPHSSRTGWSGLLWGGENIPKHSLCAWLAIKDRLGTKDRLSRWDRSIPLSCILCGGNYESRYWEGCEEKIV
APSLVCYNLFHLAGAKSSSSWRCYSGAYGYIPAHSVVY