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CSPI06G16030 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G16030
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPol protein
Genome locationChr6:14447406..14447926
RNA-Seq ExpressionCSPI06G16030
SyntenyCSPI06G16030
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035748.1 pol protein [Cucumis melo var. makuwa]2.0e-5569.27Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RMQ  Q RQKSYADVR         DKVFLKVAPMKGV+RFE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE
        ++GKLSPRFVGPFEI ERIG VAYRLALPPSLSAVH+VFHVSMLRKYV+DPSHVVDYEPLEIDENLSY EQ VE+L RE
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE

KAA0042366.1 pol protein [Cucumis melo var. makuwa]6.8e-5669.83Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RMQTTQ RQKSYADVR         DKVFLKVAPMKGV+RFE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE
        ++GKLSPRFVGPFEI ERIG VAYRLALPPSLS VH+VFHVSMLRKYV DPSHVVDYEPLEIDENLSY EQ VE+L RE
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE

KAA0043069.1 pol protein [Cucumis melo var. makuwa]2.0e-5569.44Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNSFQATI MAPFEALY                             A+QKIR+RMQT Q RQKSYADVR         DKVFLKVAPM+GV+ FE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTREA
        KKGKLSPRFVGPFEI ERIG VAYRLALPPSLS VH+VFHVSMLRKYV+DPSHVVDYEPLEIDENLSY EQ VE+L REA
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTREA

KAA0043401.1 pol protein [Cucumis melo var. makuwa]1.5e-5569.27Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM T Q RQKSYADVR         DKVFLKVAPMKGV+RFE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE
        ++GKLSPRFVGPFEI ERIG VAYRLALPPSLSAVH+VFH+SMLRKYV DPSHVVDYEPLEIDENLSYVEQ VE+L RE
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE

KAA0057638.1 pol protein [Cucumis melo var. makuwa]6.8e-5669.27Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM T Q RQKSYADVR         DKVFLKVAPMKGV+RFE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE
        ++GKLSPRFVGPFEI ERIG VAYRLALPPSLS VH+VFHVSMLRKYV DPSHVVDYEPLEIDENLSY+EQLVE+L RE
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE

TrEMBL top hitse value%identityAlignment
A0A5A7SYV5 Pol protein9.5e-5669.27Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RMQ  Q RQKSYADVR         DKVFLKVAPMKGV+RFE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE
        ++GKLSPRFVGPFEI ERIG VAYRLALPPSLSAVH+VFHVSMLRKYV+DPSHVVDYEPLEIDENLSY EQ VE+L RE
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE

A0A5A7TK90 Reverse transcriptase3.3e-5669.83Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RMQTTQ RQKSYADVR         DKVFLKVAPMKGV+RFE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE
        ++GKLSPRFVGPFEI ERIG VAYRLALPPSLS VH+VFHVSMLRKYV DPSHVVDYEPLEIDENLSY EQ VE+L RE
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE

A0A5A7TPA9 Pol protein7.3e-5669.27Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM T Q RQKSYADVR         DKVFLKVAPMKGV+RFE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE
        ++GKLSPRFVGPFEI ERIG VAYRLALPPSLSAVH+VFH+SMLRKYV DPSHVVDYEPLEIDENLSYVEQ VE+L RE
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE

A0A5A7TPB7 Pol protein9.5e-5669.44Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNSFQATI MAPFEALY                             A+QKIR+RMQT Q RQKSYADVR         DKVFLKVAPM+GV+ FE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTREA
        KKGKLSPRFVGPFEI ERIG VAYRLALPPSLS VH+VFHVSMLRKYV+DPSHVVDYEPLEIDENLSY EQ VE+L REA
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTREA

A0A5A7UR79 Pol protein3.3e-5669.27Show/hide
Query:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE
        MEFAYNNS+QATIGMAPFEALY                             A+QKIR+RM T Q RQKSYADVR         DKVFLKVAPMKGV+RFE
Subjt:  MEFAYNNSFQATIGMAPFEALY-----------------------------AMQKIRARMQTTQHRQKSYADVR---------DKVFLKVAPMKGVMRFE

Query:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE
        ++GKLSPRFVGPFEI ERIG VAYRLALPPSLS VH+VFHVSMLRKYV DPSHVVDYEPLEIDENLSY+EQLVE+L RE
Subjt:  KKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLVEILTRE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.7e-0430.3Show/hide
Query:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY
        E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F GPF + ++ G   Y L LP S+  +  + FHVS L KY
Subjt:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein3.7e-0430.3Show/hide
Query:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY
        E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F GPF + ++ G   Y L LP S+  +  + FHVS L KY
Subjt:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein3.7e-0430.3Show/hide
Query:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY
        E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F GPF + ++ G   Y L LP S+  +  + FHVS L KY
Subjt:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein3.7e-0430.3Show/hide
Query:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY
        E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F GPF + ++ G   Y L LP S+  +  + FHVS L KY
Subjt:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein3.7e-0430.3Show/hide
Query:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY
        E +   Q ++  + T   + K Y D++ +   +  P   VM          K  KL+P F GPF + ++ G   Y L LP S+  +  + FHVS L KY
Subjt:  EALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVM-------RFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAV-HNVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
AT1G42190.1 GAG/POL/ENV polyprotein7.6e-0542Show/hide
Query:  YRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLV
        Y+L LP  + A H VFHVSMLRK +    +V+   P ++ EN+  V  L+
Subjt:  YRLALPPSLSAVHNVFHVSMLRKYVADPSHVVDYEPLEIDENLSYVEQLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCGCCATTTGAGGCTTTGTATGCTATGCAGAAGATTAGAGCACGTATGCAAACAACGCAGCATAG
ACAGAAAAGTTATGCTGATGTGAGAGATAAGGTATTCTTGAAGGTAGCACCTATGAAGGGTGTTATGCGTTTTGAAAAGAAAGGGAAGTTGAGTCCTCGTTTCGTTGGAC
CATTTGAGATTTCAGAGAGAATTGGTGTTGTGGCGTATCGTTTGGCATTACCACCATCTCTCTCTGCAGTTCATAATGTTTTTCATGTTTCGATGTTGAGAAAGTATGTG
GCAGATCCATCTCATGTGGTGGACTACGAACCACTAGAGATTGATGAGAATTTGAGCTATGTGGAGCAACTAGTCGAGATTTTGACTAGAGAGGCAGATGCTTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTGCTTATAATAACAGTTTTCAGGCTACTATTGGCATGGCGCCATTTGAGGCTTTGTATGCTATGCAGAAGATTAGAGCACGTATGCAAACAACGCAGCATAG
ACAGAAAAGTTATGCTGATGTGAGAGATAAGGTATTCTTGAAGGTAGCACCTATGAAGGGTGTTATGCGTTTTGAAAAGAAAGGGAAGTTGAGTCCTCGTTTCGTTGGAC
CATTTGAGATTTCAGAGAGAATTGGTGTTGTGGCGTATCGTTTGGCATTACCACCATCTCTCTCTGCAGTTCATAATGTTTTTCATGTTTCGATGTTGAGAAAGTATGTG
GCAGATCCATCTCATGTGGTGGACTACGAACCACTAGAGATTGATGAGAATTTGAGCTATGTGGAGCAACTAGTCGAGATTTTGACTAGAGAGGCAGATGCTTCGTAG
Protein sequenceShow/hide protein sequence
MEFAYNNSFQATIGMAPFEALYAMQKIRARMQTTQHRQKSYADVRDKVFLKVAPMKGVMRFEKKGKLSPRFVGPFEISERIGVVAYRLALPPSLSAVHNVFHVSMLRKYV
ADPSHVVDYEPLEIDENLSYVEQLVEILTREADAS