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CSPI06G16050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G16050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBUD13 homolog
Genome locationChr6:14458829..14461836
RNA-Seq ExpressionCSPI06G16050
SyntenyCSPI06G16050
Gene Ontology termsGO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0140513 - nuclear protein-containing complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN47347.2 hypothetical protein Csa_022925 [Cucumis sativus]2.3e-2894.2Show/hide
Query:  MLFIPIDTTFSRLGGDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRW
        MLFIPID TFSRLGGDKVGMGQGLAKTR AEAELMELELEKDRPFARSHPGGAVNQIPERYT+AGDVR+
Subjt:  MLFIPIDTTFSRLGGDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRW
XP_022155542.1 BUD13 homolog [Momordica charantia]2.3e-0454.55Show/hide
Query:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
        K+  G+GLA+ REAEAELMELELEKDRPFARS     ++ +     +   VRW D
Subjt:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
XP_031743783.1 uncharacterized protein LOC101221496 isoform X1 [Cucumis sativus]1.6e-2696.83Show/hide
Query:  GDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWNDVVDGEV
        GDKVGMGQGLAKTR AEAELMELELEKDRPFARSHPGGAVNQIPERYT+AGDVRWNDVVDGEV
Subjt:  GDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWNDVVDGEV
XP_031743784.1 uncharacterized protein LOC101221496 isoform X2 [Cucumis sativus]3.6e-3496.1Show/hide
Query:  MLFIPIDTTFSRLGGDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWNDVVDGEV
        MLFIPID TFSRLGGDKVGMGQGLAKTR AEAELMELELEKDRPFARSHPGGAVNQIPERYT+AGDVRWNDVVDGEV
Subjt:  MLFIPIDTTFSRLGGDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWNDVVDGEV
XP_038901025.1 BUD13 homolog [Benincasa hispida]5.1e-0452.73Show/hide
Query:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
        K+  G+GLA+ REAEAELMELELEKDRPFARS     ++ +     +   +RW D
Subjt:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
TrEMBL top hitse value%identityAlignment
A0A0A0KHM0 Uncharacterized protein7.8e-2796.83Show/hide
Query:  GDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWNDVVDGEV
        GDKVGMGQGLAKTR AEAELMELELEKDRPFARSHPGGAVNQIPERYT+AGDVRWNDVVDGEV
Subjt:  GDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWNDVVDGEV
A0A1S3CHR8 BUD13 homolog2.4e-0452.73Show/hide
Query:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
        K+  G+GLA+ REAEAELMELELEKDRPFARS     ++ +     +   +RW D
Subjt:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
A0A4Y1S230 Uncharacterized protein (Fragment)3.2e-0473.53Show/hide
Query:  GDKVGMGQGLAKTREAEAELMELELEKDRPFARS
        GDKVGMG+GLA+ REAE +L ELELEK++PFAR+
Subjt:  GDKVGMGQGLAKTREAEAELMELELEKDRPFARS
A0A5A7VKV1 BUD13-like protein2.4e-0452.73Show/hide
Query:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
        K+  G+GLA+ REAEAELMELELEKDRPFARS     ++ +     +   +RW D
Subjt:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
A0A6J1DPM1 BUD13 homolog1.1e-0454.55Show/hide
Query:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
        K+  G+GLA+ REAEAELMELELEKDRPFARS     ++ +     +   VRW D
Subjt:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGDVRWND
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31870.1 unknown protein1.5e-0650Show/hide
Query:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGD
        K+  G+GLA+ REAEA L ELELEKD+PFAR+     ++Q+ +     GD
Subjt:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGD
AT1G31870.2 unknown protein1.5e-0650Show/hide
Query:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGD
        K+  G+GLA+ REAEA L ELELEKD+PFAR+     ++Q+ +     GD
Subjt:  KVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAGD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACTTCTTACGGGCTAATCTTAATCTTCATTCCAGCACTGTTTGAGCTTCTAGCGTCCTTCGAGCTTCGTTCTACACCGTTTGAGTTGTGTTCAAACGTCGTTGA
AGTAGAGATTTTTTTTCATTTATGGATGCTTTTCATTCCAATTGACACCACATTCTCCCGTCTTGGTGGAGATAAAGTTGGAATGGGACAGGGCTTAGCTAAAACACGAG
AAGCAGAAGCTGAACTTATGGAGTTAGAACTCGAGAAAGATAGACCATTTGCACGGTCACACCCAGGAGGTGCTGTTAATCAAATTCCAGAAAGATATACCGTTGCTGGA
GATGTAAGGTGGAATGATGTCGTTGATGGTGAAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATTGTGGTAAAGTGCTAGTATGGATGTTTCATGTTTAAGAAGTTTGATACTTGTATATATTTTATGTGTTTGAACATAATATGCTCAGGATGTTTCATGTAAACCTGAAG
AATTTTATGTTACAACTCGCAAATGTGAGTCGAATGCTAGTGCGAGAGTGGTACAAATATGTGAAAGGTTAAGAGATGAAAGTGGACATATAATTATGAGCACTCAAGTA
CCAATTTGAGAAAAGCTTCTATTGTCTTGACTTCCTTTGGTTATATTGACTTGATCTTCAGTCTTCACATTCATTTTGATCTTGTTATTGATTCATTCTTCTTTGTCTCT
TGTTAAATCTGTTTAGCCTATATGTTGTCCTTGTGGGGCAAAGCGTCGAACAGTGGAAGTGTCCATGGGTCCTGAAAATAGAACAGTGTTGTCAAATGATAACTTCTTAC
GGGCTAATCTTAATCTTCATTCCAGCACTGTTTGAGCTTCTAGCGTCCTTCGAGCTTCGTTCTACACCGTTTGAGTTGTGTTCAAACGTCGTTGAAGTAGAGATTTTTTT
TCATTTATGGATGCTTTTCATTCCAATTGACACCACATTCTCCCGTCTTGGTGGAGATAAAGTTGGAATGGGACAGGGCTTAGCTAAAACACGAGAAGCAGAAGCTGAAC
TTATGGAGTTAGAACTCGAGAAAGATAGACCATTTGCACGGTCACACCCAGGAGGTGCTGTTAATCAAATTCCAGAAAGATATACCGTTGCTGGAGATGTAAGGTGGAAT
GATGTCGTTGATGGTGAAGTCTAAGACAGAAGATTCTGTCTTGTGTGAAGTTATTGATGGAGGAGAGCTTAAGTCCATGAGACATTTAAATGTTCGAGGGAAAAGTGCTA
CACTTCCTTCAATTATTGGTTGGATTGAATAAGCATATCCTATAGATTTCACCTTTTAATGAAGTTTCTTCTTTTTGGGATATATATATAGATGTGATAATTTGTTGATA
TACTTGGATATAGTTAGGTGAATTAGTTTAGTTGATACACCTATAGTTAGGC
Protein sequenceShow/hide protein sequence
MITSYGLILIFIPALFELLASFELRSTPFELCSNVVEVEIFFHLWMLFIPIDTTFSRLGGDKVGMGQGLAKTREAEAELMELELEKDRPFARSHPGGAVNQIPERYTVAG
DVRWNDVVDGEV