; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G16170 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G16170
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptiontRNA-intron lyase
Genome locationChr6:14611051..14612066
RNA-Seq ExpressionCSPI06G16170
SyntenyCSPI06G16170
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0000213 - tRNA-intron endonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR006676 - tRNA-splicing endonuclease
IPR006677 - tRNA intron endonuclease, catalytic domain-like
IPR006678 - tRNA intron endonuclease, N-terminal
IPR011856 - tRNA endonuclease-like domain superfamily
IPR036167 - tRNA intron endonuclease, catalytic domain-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035302.1 tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo var. makuwa]3.3e-13194.98Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPIS+TVLHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        E NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EGRDSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+
Subjt:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

KAG7010605.1 tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.6e-11584.1Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        M PRWKGKASEA+ALADP+S  VL LQSS   S+AQGLLSG  ILY ADEEQTDLLNR CFGR I+TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        E N QELW+ MK++KATFPEFY+AY+HLR+KNW+VRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EG  SN N RLRVWSDFLCT+RLCGSVAKTLLVL+
Subjt:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSG VSPSCLD+YSIEERTVTRWSPEQCRENP KV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_004149565.1 tRNA-splicing endonuclease subunit Sen2-1 [Cucumis sativus]1.5e-16099.29Show/hide
Query:  MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR
        MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNT+LHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR
Subjt:  MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR

Query:  TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE
        TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE
Subjt:  TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE

Query:  FAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        FAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  FAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_008463899.1 PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo]2.5e-13990.77Show/hide
Query:  FFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTA
        F   L  P     F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+TVLHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTA
Subjt:  FFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTA

Query:  EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGR
        EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EGR
Subjt:  EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGR

Query:  DSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        DSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  DSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_038900547.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida]1.2e-12289.12Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGK SEAKALADP+SN VL LQSS   SNAQGLLSGS +LY ADEEQTDLLNR CFGRPILTAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        E N QELW+ MK+QK TFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSE+AVLVL EG  SN NGRLRVWSDFLCT+RLCGSVAKTLLVLT
Subjt:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

TrEMBL top hitse value%identityAlignment
A0A0A0KEN4 tRNA-intron lyase7.2e-16199.29Show/hide
Query:  MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR
        MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNT+LHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR
Subjt:  MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNR

Query:  TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE
        TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE
Subjt:  TCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSE

Query:  FAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        FAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  FAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A1S3CK86 tRNA-intron lyase1.2e-13990.77Show/hide
Query:  FFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTA
        F   L  P     F LLS V AVDFTVSPPASMAPRWKGKASEAKALADPIS+TVLHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTA
Subjt:  FFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTA

Query:  EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGR
        EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCE NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EGR
Subjt:  EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGR

Query:  DSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        DSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  DSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A5A7SVN0 tRNA-intron lyase1.6e-13194.98Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPIS+TVLHLQSSFI SNA+GLLSGS ILYLADEEQTDLLNRTCFGR ILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        E NFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EGRDSNGNGRLRVWSDFLCT+RLCGSVAKTLLVL+
Subjt:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A6J1FWV5 tRNA-intron lyase2.7e-11584.1Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        M PRWKGKASEA+ALADP+S  VL LQSS   S+AQGLLSG  ILY ADEEQTDLLNR CFGR I+TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
        E N QELW+ MK++KATFPEFY+AY+HLR+KNW+VRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EG  SN N RLRVWSDFLCT+RLCGSVAKTLLVL+
Subjt:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSG VSPSCLD+YSIEERTVTRWSPEQCRENP KV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A6J1JBL2 tRNA-intron lyase6.0e-11576.21Show/hide
Query:  IQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEK
        I L LP        L  +     ++     M PRWKGKASEA+ALADP+S  VL LQSS   S+AQGLLSG  ILY ADEEQTDLLNR CFGR I+TA+ 
Subjt:  IQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEK

Query:  DKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDS
        DKQWFQFGMEEAFYLSYHLNCLKIVDGQD E N QELW+ MK+QKATFPEFY+AY+HLR+KNW+VRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EG  S
Subjt:  DKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDS

Query:  NGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        N NGRLRVWSDFLCT+RLCGSVAKTLLVL+VNDNG+G VSPSCLDS+SIEERTVTRWSPEQCRENP KV
Subjt:  NGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

SwissProt top hitse value%identityAlignment
Q5M954 tRNA-splicing endonuclease subunit Sen27.3e-1730.25Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNG
        ++ Q  +EEAF+L+Y L CL I   ++      +LW+     + TF   Y+AY + R K WV + G +YG D + YR  P   H+ ++V++  E  D N 
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNG

Query:  NGRLR---VWSDFLCTVRLCGSVAKTL----LVLTVNDNGSGFVSPSCLDSYSIEERTVTRW
         G LR    W       R+ G+V+K L    L+           +P C+    ++E  ++RW
Subjt:  NGRLR---VWSDFLCTVRLCGSVAKTL----LVLTVNDNGSGFVSPSCLDSYSIEERTVTRW

Q5Z6B1 Probable tRNA-splicing endonuclease subunit Sen23.4e-5950.62Show/hide
Query:  PRWK----GKASEAKALADPISNTVLHLQSSFIHSNAQGLLS---GSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIV
        PRWK    GK   + A A+P+S  V  L++SFI S    +LS   GS +L +   EQ  +LNR  FG  I  A   K WFQ   EE FYL + LNC+++ 
Subjt:  PRWK----GKASEAKALADPISNTVLHLQSSFIHSNAQGLLS---GSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIV

Query:  DGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRD-SNGNGRLRVWSDFLCTVRLCGSVAK
           + + +  ELW Y ++   +FPE Y AY HLRLKNWVVR G QYG DFVAYRHHP+LVHSEFAV+V+ EG +  N  GRL VWSD LC +R  GSVAK
Subjt:  DGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRD-SNGNGRLRVWSDFLCTVRLCGSVAK

Query:  TLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWSPEQCRE
        TLLVLT++ +      SP CL+   + ERT+TRW  +QCRE
Subjt:  TLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWSPEQCRE

Q6P7W5 tRNA-splicing endonuclease subunit Sen24.3e-1730.25Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNG
        ++ Q  +EEAF+L+Y L CL I   ++      +LW+     + TF   Y+AY + R K WV + G +YG D + YR  P   H+ ++V++  E  D N 
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNG

Query:  NGRLR---VWSDFLCTVRLCGSVAKTL----LVLTVNDNGSGFVSPSCLDSYSIEERTVTRW
         G LR    W       R+ G+V+K L    L+           +P C+    ++E  ++RW
Subjt:  NGRLR---VWSDFLCTVRLCGSVAKTL----LVLTVNDNGSGFVSPSCLDSYSIEERTVTRW

Q9LSS3 tRNA-splicing endonuclease subunit Sen2-26.9e-6854.43Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S   + + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
          N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHPSLVHSE++VLV      S  + RLRVWSD  C VRL GSVAKTLL L 
Subjt:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN

Q9M1E8 tRNA-splicing endonuclease subunit Sen2-11.5e-6754.77Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS   + A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL
         EN   +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHPSLVHSE+AVLV   G    GN RL+VWSD  C+VRL GSVAK+LLVL
Subjt:  CENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

Arabidopsis top hitse value%identityAlignment
AT3G45577.1 tRNA-intron endonucleases4.8e-1649.4Show/hide
Query:  EQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKN
        EQ +LL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI + G+   N   +LWR +++ K  F   Y AY HLR KN
Subjt:  EQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKN

AT3G45590.1 splicing endonuclease 11.1e-6854.77Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS   + A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL
         EN   +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHPSLVHSE+AVLV   G    GN RL+VWSD  C+VRL GSVAK+LLVL
Subjt:  CENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

AT3G45590.2 splicing endonuclease 11.1e-6854.77Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS   + A G LS   +L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL
         EN   +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHPSLVHSE+AVLV   G    GN RL+VWSD  C+VRL GSVAK+LLVL
Subjt:  CENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

AT5G60230.1 splicing endonuclease 24.9e-6954.43Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S   + + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT
          N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHPSLVHSE++VLV      S  + RLRVWSD  C VRL GSVAKTLL L 
Subjt:  ENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN

AT5G60230.2 splicing endonuclease 21.7e-6954.62Show/hide
Query:  SMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD
        SMAPRWK K +EAKALA+PIS +V  LQ S   + + G LS   +L   + EQ +LL+R CFGR +L+AEK K+W Q   EEAF+L Y+L C+KI     
Subjt:  SMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD

Query:  CENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL
        C  N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHPSLVHSE++VLV      S  + RLRVWSD  C VRL GSVAKTLL L
Subjt:  CENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVL

Query:  TVNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
         VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  TVNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTAGTTAAAACTCCCACTGTTGTCTTTTTCATTCAACTTACCCTCCCCGCCGCCGCACACTTCTTTTTTCTTTTATCTGGCGTTGCTGCCGTCGATTTCACTGT
TTCACCGCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATCTCCAATACTGTACTTCACCTTCAATCTTCTTTCATAC
ACTCCAACGCTCAAGGGTTATTATCTGGTTCTATCATACTTTATTTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACCAATTCTTACTGCT
GAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGATTGTGAAAATAATTTTCA
AGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATG
GGGTTGATTTTGTGGCGTATCGTCATCATCCGTCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTGTGAAGGAAGAGACAGTAATGGAAATGGGCGATTGAGGGTT
TGGTCTGATTTTCTTTGCACAGTTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTACCGTCAATGATAATGGAAGTGGATTTGTTTCTCCTTCGTGTTTGGA
CAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
AGCCAACTTGCCATTGACACTATCTCTTTATCTCTTAAAACCGTTTGTTCCAATGAAATATTTGGGTCTGATCTTATGATAATACTTCTTCTCACTTCTTTCTTCTCTTC
AATAATACTAAATCTAGGGAAACTGTAAATAGTCCACACCATAAACATAGATGGTTGTAGTTAAAACTCCCACTGTTGTCTTTTTCATTCAACTTACCCTCCCCGCCGCC
GCACACTTCTTTTTTCTTTTATCTGGCGTTGCTGCCGTCGATTTCACTGTTTCACCGCCGGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCT
AGCTGATCCCATCTCCAATACTGTACTTCACCTTCAATCTTCTTTCATACACTCCAACGCTCAAGGGTTATTATCTGGTTCTATCATACTTTATTTAGCCGACGAAGAAC
AAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACCAATTCTTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCAC
TTGAATTGCCTCAAAATTGTCGATGGACAAGATTGTGAAAATAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTA
CCGACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGTCTCTTGTTCACTCTGAATTTGCTGTTC
TGGTGTTGTGTGAAGGAAGAGACAGTAATGGAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTTTGCACAGTTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTT
CTTACCGTCAATGATAATGGAAGTGGATTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAA
TCCTGCAAAAGTGTGAAATAGACCAA
Protein sequenceShow/hide protein sequence
MVVVKTPTVVFFIQLTLPAAAHFFFLLSGVAAVDFTVSPPASMAPRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTCFGRPILTA
EKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCENNFQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRV
WSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV