CuGenDBv2

Gene ID	CSPI06G17130
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	beta-D-xylosidase 1
Genome location	Chr6:15449466..15450011
RNA-Seq Expression	CSPI06G17130
Synteny	CSPI06G17130
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575099.1 Beta-D-xylosidase 1, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-06

89.66

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPVIFPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

KAG7013671.1 Beta-D-xylosidase 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-06

89.66

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPVIFPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

TYK02942.1 beta-D-xylosidase 1-like [Cucumis melo var. makuwa]

2.9e-06

86.21

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPV+FPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

XP_008458374.2 PREDICTED: LOW QUALITY PROTEIN: beta-D-xylosidase 1-like [Cucumis melo]

2.9e-06

86.21

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPV+FPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

XP_022138609.1 beta-D-xylosidase 1 [Momordica charantia]

2.9e-06

86.21

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPV+FPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCY2 Uncharacterized protein

4.6e-10

42.15

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGFVSPPIPPPESKSLTLTAPRLRSLHSDRRQ--------EHRNRRRI-SHHYRLLNRSKPDLV--VLDRIRKG
        MGLRPDPTTSYPGRT RFYKGPVIFPFGF S             ++  +   H+D           + +N   +   H  ++  + P+ +   L    K 
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGFVSPPIPPPESKSLTLTAPRLRSLHSDRRQ--------EHRNRRRI-SHHYRLLNRSKPDLV--VLDRIRKG

Query:  PYHGLDLEASSNRNYVKITEK
              LEASSNRNYVKITEK
Subjt:  PYHGLDLEASSNRNYVKITEK

A0A0A0KHZ3 Fn3_like domain-containing protein

1.4e-06

86.21

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPV+FPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

A0A5D3BVV3 Beta-D-xylosidase 1-like

1.4e-06

86.21

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPV+FPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

A0A6J1CAK4 beta-D-xylosidase 1

1.4e-06

86.21

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPV+FPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

A0A6J1L226 beta-D-xylosidase 1-like

1.4e-06

86.21

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF
        MGLRPDP+T YPGRT RFYKGPV+FPFGF
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFGF

SwissProt top hits

e value

%identity

Alignment

A5JTQ2 Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment)

3.6e-04

64.29

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG
        M +R DP T YPGRT RFYKG  +F FG
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG

A5JTQ3 Beta-xylosidase/alpha-L-arabinofuranosidase 2

8.1e-04

35.56

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG-------FVSPPIPPPESKSLTLT------APRLRSLHSDRRQEHRNRRRISHHYRLLNRSK
        M +RPDP T YPGRT RFYKG  +F FG       F    +  P+  S+ L       + + +SL  D   EH        H R+ N+ K
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG-------FVSPPIPPPESKSLTLT------APRLRSLHSDRRQEHRNRRRISHHYRLLNRSK

P83344 Putative beta-D-xylosidase (Fragment)

7.3e-05

67.86

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG
        M +R DP   YPGRT RFY GPV+FPFG
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG

Arabidopsis top hits

e value

%identity

Alignment

AT1G02640.1 beta-xylosidase 2

8.3e-04

57.14

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG
        M +RP  +   PGRT RFY GPV++PFG
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG

AT5G49360.1 beta-xylosidase 1

7.5e-05

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Query:  SYPGRTNRFYKGPVIFPFGF
        +YPGRT RFYKGPV+FPFGF
Subjt:  SYPGRTNRFYKGPVIFPFGF

AT5G64570.1 beta-D-xylosidase 4

8.3e-04

53.57

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Query:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG
        M +RPD  + YPGRT RFY G  ++ FG
Subjt:  MGLRPDPTTSYPGRTNRFYKGPVIFPFG

Sequences

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CDS sequence

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ATGGGCCTAAGACCCGACCCGACAACCAGCTATCCGGGTCGAACCAACCGGTTCTACAAGGGTCCGGTCATATTCCCATTCGGGTTCGTTTCTCCTCCAATTCCTCCGCC
GGAATCAAAGTCTCTCACACTGACTGCGCCCCGTCTTCGATCTCTCCATTCTGATCGACGTCAAGAACACCGGAACCGTCGACGGATCTCACACCACTATCGTCTTCTCA
ACCGCTCCAAACCAGATCTGGTCGTACTTGATCGGATTCGAAAAGGTCCATATCATGGCCTGGATCTTGAAGCGAGTTCGAATCGAAATTATGTTAAAATTACAGAGAAG
TAA

mRNA sequence

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Protein sequence

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MGLRPDPTTSYPGRTNRFYKGPVIFPFGFVSPPIPPPESKSLTLTAPRLRSLHSDRRQEHRNRRRISHHYRLLNRSKPDLVVLDRIRKGPYHGLDLEASSNRNYVKITEK

CSPI06G17130 (gene) of Cucumber (PI 183967) v1 genome