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CSPI06G17540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G17540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDynein light chain
Genome locationChr6:15715749..15718759
RNA-Seq ExpressionCSPI06G17540
SyntenyCSPI06G17540
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150499.1 dynein light chain 1, cytoplasmic [Cucumis sativus]1.5e-5899.15Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQG LLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_008458417.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo]5.8e-5897.44Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNL+VKSVSEDRKPPAVT TGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]2.1e-5594.87Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNL+VKSVSEDRKP AV TTGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023006429.1 dynein light chain 1, cytoplasmic [Cucurbita maxima]1.3e-5493.16Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNL+VKSVSEDRKP  + TTGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_038906782.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]1.7e-5796.58Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNL+VKSVSEDRKPPAV TTGKKIVIKSADMFGDVQK+AI+VAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A0A0KCI4 Dynein light chain7.4e-5999.15Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQG LLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A1S3C7T8 Dynein light chain2.8e-5897.44Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNL+VKSVSEDRKPPAVT TGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1EQC6 Dynein light chain3.2e-5491.45Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN +VK+VSEDRKP AV TTGKKIVIKSADMFGDVQK+A+DVAI AFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1H8A5 Dynein light chain1.0e-5594.87Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNL+VKSVSEDRKP AV TTGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1L253 Dynein light chain6.5e-5593.16Show/hide
Query:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNL+VKSVSEDRKP  + TTGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic2.4e-3070.93Show/hide
Query:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q+ AID A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic4.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q+ A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic4.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q+ A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic4.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q+ A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic4.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q+ A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein3.2e-1442.86Show/hide
Query:  IKSADMFGDVQKKAIDVA---IAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        ++++DM    Q +A  ++   + A    +  K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  IKSADMFGDVQKKAIDVA---IAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.5e-1141.18Show/hide
Query:  KIVIKSADMFGDVQKKAIDVAIAAFEKHSVE--KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K IA  IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDVQKKAIDVAIAAFEKHSVE--KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein2.0e-4067.77Show/hide
Query:  KRSIQGNLLVKSVSEDRK---------PPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTH
        K+S+ G    +++ +DR+         PPA    GK+ VIKSADM  D+QK+AI++AI+AFEK+SVEKDIAE IKKEFDK+HG TWHCIVGRNFGSYVTH
Subjt:  KRSIQGNLLVKSVSEDRK---------PPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTH

Query:  ETNHFVYFYLDQKAVLLFKSG
        ETNHFVYFYLDQKAVLLFKSG
Subjt:  ETNHFVYFYLDQKAVLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein7.5e-1140Show/hide
Query:  KIVIKSADMFGDVQKKAIDVAIAAFEKHSVEK--DIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K V+   DM   +++ A+ +A  A +   V +   IA  IKKEFD+ +G  W CIVG +FGS+VTH +  F++F +    +LLFK
Subjt:  KIVIKSADMFGDVQKKAIDVAIAAFEKHSVEK--DIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein3.8e-1551.19Show/hide
Query:  IKSADMFGDVQKKAIDVA---IAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        I +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLFK+
Subjt:  IKSADMFGDVQKKAIDVA---IAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAACGATGCTAAGAGAAGCATTCAAGGGAATCTATTGGTGAAATCTGTGTCGGAAGATCGGAAACCACCGGCTGTCACCACTACTGGGAAGAAAATTGTTATCAA
GAGTGCCGATATGTTTGGTGATGTGCAGAAAAAGGCTATTGATGTCGCTATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATATAGCAGAGTGTATTAAGAAAGAGT
TTGATAAGAGACATGGACCGACCTGGCACTGCATTGTTGGCCGTAATTTTGGTTCGTACGTGACACACGAGACAAACCACTTCGTTTACTTCTACTTGGATCAAAAGGCA
GTTTTGTTGTTCAAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
GCTCCATTAAAAGGACCCGATTGCAAAAAACCACAATAAAGTTCCAAAAAGAGTTAAAAATCACTTTATCCTCTCAGATTCTGAGAGAACTCACGAGCTTTCCTTACATT
TTCCACTCAAATCGATGAACTAATTCCAAATTTCTTCAAACAACAAGAACTACTTCAACAGATTGATTCCTCATATTCCGTCGCTTCCGCACCCGCACCCGCACCGGAGA
TCAGCAGTGAAAAAATGAGTAACGATGCTAAGAGAAGCATTCAAGGGAATCTATTGGTGAAATCTGTGTCGGAAGATCGGAAACCACCGGCTGTCACCACTACTGGGAAG
AAAATTGTTATCAAGAGTGCCGATATGTTTGGTGATGTGCAGAAAAAGGCTATTGATGTCGCTATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATATAGCAGAGTG
TATTAAGAAAGAGTTTGATAAGAGACATGGACCGACCTGGCACTGCATTGTTGGCCGTAATTTTGGTTCGTACGTGACACACGAGACAAACCACTTCGTTTACTTCTACT
TGGATCAAAAGGCAGTTTTGTTGTTCAAATCTGGTTGATAAACATGTATATTATGCAGATTAATGAATCTTATTAACTGATTTTATGATCATCGCAGTTTAATCAAATGA
TGATATCCTTTGTGGACAAGACAGCCTTCCCCATTTGCACCTCTCTTTTTTCTTGTACCTAATGATTTTGCTTAGGACACTTTAGCCTTTATATTAGACATAATCAGCTT
TGTTCACACGCATTATGTTCAAAAGTAGTTTTTCACTTTCCTCTGTGTTGATTGCATTTGTTGCCGTTCTATATCATCACGAGTTTCGAGTTGATATTCTGAATTCATTT
TGAGTCGTTGGCCCATCATATGTCTCGTTT
Protein sequenceShow/hide protein sequence
MSNDAKRSIQGNLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA
VLLFKSG