; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G17870 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G17870
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr6:16230843..16231280
RNA-Seq ExpressionCSPI06G17870
SyntenyCSPI06G17870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011658449.1 uncharacterized protein LOC105436008 [Cucumis sativus]1.0e-2755.7Show/hide
Query:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EW
        MASVSQQTKEN  M I YPML   NYT+W IK  AIL+ Q VW+AIEP RG E   +KDKKA                                    E 
Subjt:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EW

Query:  VKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDSS
        VKM RV  LKSEFNVLR+KETETIDEF GKI++LASKFTT+GVALEDSS
Subjt:  VKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDSS

XP_031737549.1 uncharacterized protein LOC116402439 [Cucumis sativus]1.6e-3060.4Show/hide
Query:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EW
        MAS+SQQTKEN  MSILY MLT  NYTVW IKA AIL+AQGV +AIEPARGAE   +KDKKA                                    E 
Subjt:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EW

Query:  VKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDSS
        VKM RVQTLKSEF+VLR+KETETIDEF GKI+ LASKFTT+GVALEDSS
Subjt:  VKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDSS

XP_031741709.1 uncharacterized protein LOC116403904 [Cucumis sativus]2.9e-2758.09Show/hide
Query:  MSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKK------------------------------------AEWVKMTRVQTLKSEF
        M+ILYPMLT  NYTVW IKA AIL+AQGVW+AIEPA+GAE   +KDKK                                    +E VKM RVQTLKSEF
Subjt:  MSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKK------------------------------------AEWVKMTRVQTLKSEF

Query:  NVLRVKETETIDEFEGKINELASKFTTIGVALEDSS
        NVLR+KETET+DEF GKI+ LASKFTT+GVALEDSS
Subjt:  NVLRVKETETIDEFEGKINELASKFTTIGVALEDSS

XP_031741713.1 uncharacterized protein LOC116403908 [Cucumis sativus]5.0e-2760.29Show/hide
Query:  MSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EWVKMTRVQTLKSEF
        MSILYPMLT  NYTVW IKA AILNAQGVW+AIEPARGAE   +KDKKA                                    E VKM RVQTLKSEF
Subjt:  MSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EWVKMTRVQTLKSEF

Query:  NVLRVKETETIDEFEGKINELASKFTTIGVALEDSS
        NVLR+KE ETIDEF GKI+ LASKFTT+ VALEDSS
Subjt:  NVLRVKETETIDEFEGKINELASKFTTIGVALEDSS

XP_031745073.1 uncharacterized protein LOC116405251 [Cucumis sativus]1.6e-3059.06Show/hide
Query:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EW
        M S SQQTKEN  M ILYPMLT  NYTVW IKA AIL+AQGVW+AIEPARGAE   +KDKKA                                    E 
Subjt:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EW

Query:  VKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDSS
        VKM RVQTLK EFNVLR+KETE IDEF GKI+ LASKFTT+GVAL+DSS
Subjt:  VKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDSS

TrEMBL top hitse value%identityAlignment
A0A5N6M0G6 Uncharacterized protein6.8e-1436.73Show/hide
Query:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGA---EEKDK-------------------------------KAEWVKMTR
        +A+ SQ  KE   +S+  P LT  NYT WAIK  A+++AQG+W+ +EP  GA   E K+K                               KA +V   R
Subjt:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGA---EEKDK-------------------------------KAEWVKMTR

Query:  VQ-----TLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALED
        VQ     TLK+EF +L++KE E+IDEF GK++ + +K+ ++G  LED
Subjt:  VQ-----TLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALED

A0A5N6M0J0 Integrase catalytic domain-containing protein8.9e-1436.42Show/hide
Query:  MASVSQ---QTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAEEKDKK---------------------------------------
        MASV+      KE S +++  PMLT  NYT WAIK  A+++AQG+WDA+EP  G    +KK                                       
Subjt:  MASVSQ---QTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAEEKDKK---------------------------------------

Query:  AEWVKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDS
        A+ V+   + TLKSEF  LR+KETETIDE+ GK++ + S+ +++G  LED+
Subjt:  AEWVKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDS

A0A5N6P849 Uncharacterized protein1.8e-1439.19Show/hide
Query:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARG--AEEKDKK-------------------------------------AEW
        MA  +   KE++ MS+  P+LT  NYT WAIK  AIL+AQG+WDAIEP  G  A+EK  K                                     AE 
Subjt:  MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARG--AEEKDKK-------------------------------------AEW

Query:  VKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDS
        V+  R+ TL+SEF  LR+K+ ETIDE+ GK++ + SK +++G  L DS
Subjt:  VKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDS

Q0JH75 Os01g0879800 protein8.9e-1439.31Show/hide
Query:  SVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EWVK
        S S+  +E   +S+ YP+LT  NY+ WAIK  A + AQG+WDAIEPA       +KDK+A                                    E VK
Subjt:  SVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EWVK

Query:  MTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALED
          RVQTLKS+F  L +K+TE+IDEF GKI+ LA+K + +GV ++D
Subjt:  MTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALED

Q2QUP7 Laccase8.9e-1439.31Show/hide
Query:  SVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EWVK
        S S+  +E   +S+ YP+LT  NY+ WAIK  A + AQG+WDAIEPA       +KDK+A                                    E VK
Subjt:  SVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAE---EKDKKA------------------------------------EWVK

Query:  MTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALED
          RVQTLKS+F  L +K+TE+IDEF GKI+ LA+K + +GV ++D
Subjt:  MTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGTCTCGCAACAAACAAAAGAGAACAGCGAAATGTCAATTCTCTATCCGATGTTAACTCTAGACAACTACACGGTGTGGGCGATAAAGGCAGCAGCAATTCT
CAACGCCCAAGGAGTTTGGGATGCAATAGAGCCAGCGAGAGGAGCCGAAGAAAAGGACAAGAAGGCCGAGTGGGTGAAGATGACACGAGTTCAAACCTTGAAGAGTGAGT
TTAATGTTCTTCGGGTGAAGGAAACCGAGACAATCGATGAGTTCGAAGGAAAAATCAACGAATTAGCAAGCAAGTTCACCACCATCGGAGTTGCACTTGAGGATTCATCC
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCGTCTCGCAACAAACAAAAGAGAACAGCGAAATGTCAATTCTCTATCCGATGTTAACTCTAGACAACTACACGGTGTGGGCGATAAAGGCAGCAGCAATTCT
CAACGCCCAAGGAGTTTGGGATGCAATAGAGCCAGCGAGAGGAGCCGAAGAAAAGGACAAGAAGGCCGAGTGGGTGAAGATGACACGAGTTCAAACCTTGAAGAGTGAGT
TTAATGTTCTTCGGGTGAAGGAAACCGAGACAATCGATGAGTTCGAAGGAAAAATCAACGAATTAGCAAGCAAGTTCACCACCATCGGAGTTGCACTTGAGGATTCATCC
Protein sequenceShow/hide protein sequence
MASVSQQTKENSEMSILYPMLTLDNYTVWAIKAAAILNAQGVWDAIEPARGAEEKDKKAEWVKMTRVQTLKSEFNVLRVKETETIDEFEGKINELASKFTTIGVALEDSS