; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G17940 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G17940
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA-binding protein 2
Genome locationChr6:16287963..16296293
RNA-Seq ExpressionCSPI06G17940
SyntenyCSPI06G17940
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647163.1 hypothetical protein Csa_018814 [Cucumis sativus]5.2e-12898.7Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAP
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK
        +DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Subjt:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK

XP_031743537.1 RNA-binding protein 2 isoform X3 [Cucumis sativus]5.2e-12898.7Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAP
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK
        +DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Subjt:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK

XP_031743540.1 RNA-binding protein 2 isoform X6 [Cucumis sativus]5.2e-12898.7Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAP
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK
        +DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Subjt:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK

XP_031743541.1 RNA-binding protein 2 isoform X7 [Cucumis sativus]3.9e-13698.77Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAP
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTS
        +DEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTS
Subjt:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTS

XP_031743542.1 RNA-binding protein 2 isoform X8 [Cucumis sativus]5.2e-12898.7Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAP
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK
        +DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Subjt:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK

TrEMBL top hitse value%identityAlignment
A0A0A0KCN5 RRM domain-containing protein1.0e-17498.71Show/hide
Query:  MGAWSGELERQKSMQWQLRGIILNRNYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRP
        MGAWSGELERQKSMQWQLRGIILNRNYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRP
Subjt:  MGAWSGELERQKSMQWQLRGIILNRNYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRP

Query:  VANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSK
        VANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSK
Subjt:  VANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSK

Query:  ESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTSAIAGIWRVPASSNTPKSAYIAG
        ESKHRGGDPLILCFVDFANPACAATAMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTSAIAGIWRVPASSNTPKSAYI G
Subjt:  ESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTSAIAGIWRVPASSNTPKSAYIAG

Query:  HSTYESVAPQ
        HSTYESVAPQ
Subjt:  HSTYESVAPQ

A0A1S3B4F0 RNA-binding protein 24.0e-12696.96Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        ELPASGLSTGHDMHNYL SDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV NRMPGPLLPDPIVMSRPPAVSPDLAP
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NGRN+EYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK
        +DEQDPESNYLRLQFSRHPGPRSG GS GK
Subjt:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK

A0A6J1CKA2 RNA-binding protein 2-like6.6e-12191.74Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        ELP+SGL TGH+MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSF SGEVPTHG+MGM RPVANRMPV +RMPGP +PDP+VMSRPPAVSPDLAP
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NGRN+EYGNHLP+DSM+RPGRETVPLPPDASNTLYVEGLP DSSRREVAHIFRPFVGYKELR VSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK
        +DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Subjt:  IDEQDPESNYLRLQFSRHPGPRSGSGSGGK

A0A6J1FKI7 RNA-binding protein 2-like isoform X11.5e-11787.45Show/hide
Query:  NYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRP
        N ALLSLS+E P+SGL   H+MHNY+ +DD GGPR+VKDTQTIGSAYDRYLQSVQ SSFTSGEVPTHGEMGMGRP+ANRMP+ NRMPGPLLPDP+VMSRP
Subjt:  NYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRP

Query:  PAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAAT
         AVSPDLA NGRN+EY NHLPVDS +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRPFVGYKELR V+KESKHRGGDPLILCFVDFANPACAAT
Subjt:  PAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAAT

Query:  AMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK
        AMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Subjt:  AMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK

A0A6J1JZU6 RNA-binding protein 2-like isoform X16.2e-11988.28Show/hide
Query:  NYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRP
        N ALLSLS+E P+SGL   H+MHNY+ +DD GGPR+VKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRP+ANRMP+ NRMPGPLLPDP+VMSRP
Subjt:  NYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRP

Query:  PAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAAT
         AVSPDLA NGRN+EYGNHLPVDS +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRPFVGYKELR V+KESKHRGGDPLILCFVDFANPACAAT
Subjt:  PAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAAT

Query:  AMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK
        AMSALQGYK+DEQDPESNYLRLQFSRHPGPRSGSGSGGK
Subjt:  AMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGK

SwissProt top hitse value%identityAlignment
A1A6K6 Nuclear speckle RNA-binding protein A6.5e-4951.34Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        E P+S ++ GH    Y   +D      V DT+TIGSAYDRYLQSVQ     SGE    G + MGR           +      D  ++ R   +  D  P
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NG  + +    PV      GR    LP DASNTLYVEGLP + SRREVAHIFRPFVGY+E+R V+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSG
        +DE + +S +LRLQFSR PG R G
Subjt:  IDEQDPESNYLRLQFSRHPGPRSG

F4HWF9 Nuclear speckle RNA-binding protein B3.3e-6151.76Show/hide
Query:  GIILNRNYALLSLSAEL--------PASG---LSTGHDMHNYLTSD-DRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV
        GI+    Y+L S+S +         P  G   L    DMH+YL+ D DRG P SVKDT++IGSAYDRYLQS+Q     S E      +GM R   +    
Subjt:  GIILNRNYALLSLSAEL--------PASG---LSTGHDMHNYLTSD-DRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV

Query:  RNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGG
         N MPGP + + ++     ++  D  PNGR++ +G    +DS+ RPGRE  PLPPD SNTLYVEGLP + SRREV+HIFRPFVGY+E+R V+++SKHR G
Subjt:  RNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGG

Query:  DPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSG
        DP +LCFVDF N ACAATA+SALQ Y++DE +P+S  LRLQF R+PGPR G   G
Subjt:  DPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSG

G7ID19 RNA-binding protein 23.5e-7160.26Show/hide
Query:  SGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAV--SPDLAPNG
        SG+++G+++HNY+  ++  G + + DT+ +GSAYDR+LQS  L+SF SGE    G +G  R V         +PG  L DP  M     V   PDL+ NG
Subjt:  SGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAV--SPDLAPNG

Query:  RNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKID
        R++ +G  LP+D++SRPG ET+PLP DAS+TLYVEGLP DS++REVAHIFRPFVGY+E+R V+KESKHRGGDPLILCFVDFANPACAATA+SALQGYK+D
Subjt:  RNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKID

Query:  EQDPESNYLRLQFSRHPGPRSGS-GSGGK
        E +PES+YLRLQFSR PG RSG  G  GK
Subjt:  EQDPESNYLRLQFSRHPGPRSGS-GSGGK

Q6JB11 Protein MATERNALLY EXPRESSED GENE 51.8e-2763.64Show/hide
Query:  MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDE
        M   GR   PLPPDAS+TLY+EGLP + +RREV+HIFRPFVG++E+R V+KES+H GGDP +LCFVDF NPA A  A+ ALQG+  D+
Subjt:  MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDE

Q8H0P8 RNA-binding protein 12.1e-7162.56Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVM-SRPPAVSPDLA
        E+PASGL +G++MH     +DR G   VKD++TIGSAYDRYLQ  Q+ SFTSGE  T G +G+ R +         +P   L DP  M  R     PDLA
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVM-SRPPAVSPDLA

Query:  PNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGY
        PNGR + YG   P+D +SR G E   LPPDAS TLY+EGLP D +RREVAHIFRPFVGY+E+R VSKE+KHR GDPLILCFVDFANPACAATA+SALQGY
Subjt:  PNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGY

Query:  KIDEQDPESNYLRLQFSRHPGPRSGSG
        K+DE +PES++LRLQFSR+PGPRSG G
Subjt:  KIDEQDPESNYLRLQFSRHPGPRSGSG

Arabidopsis top hitse value%identityAlignment
AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-0728.04Show/hide
Query:  PNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGY
        PNG   +  N +PV      G++T+P     +N L++  LP +++   +  +F  + G+KE+R +  +          + FV++ +   ++ AM ALQG+
Subjt:  PNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGY

Query:  KIDEQDP
        KI  Q+P
Subjt:  KIDEQDP

AT1G21320.1 nucleotide binding;nucleic acid binding2.4e-6251.76Show/hide
Query:  GIILNRNYALLSLSAEL--------PASG---LSTGHDMHNYLTSD-DRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV
        GI+    Y+L S+S +         P  G   L    DMH+YL+ D DRG P SVKDT++IGSAYDRYLQS+Q     S E      +GM R   +    
Subjt:  GIILNRNYALLSLSAEL--------PASG---LSTGHDMHNYLTSD-DRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPV

Query:  RNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGG
         N MPGP + + ++     ++  D  PNGR++ +G    +DS+ RPGRE  PLPPD SNTLYVEGLP + SRREV+HIFRPFVGY+E+R V+++SKHR G
Subjt:  RNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGG

Query:  DPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSG
        DP +LCFVDF N ACAATA+SALQ Y++DE +P+S  LRLQF R+PGPR G   G
Subjt:  DPLILCFVDFANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSG

AT1G21320.2 nucleotide binding;nucleic acid binding3.1e-6256.42Show/hide
Query:  DMHNYLTSD-DRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNH
        DMH+YL+ D DRG P SVKDT++IGSAYDRYLQS+Q     S E      +GM R   +     N MPGP + + ++     ++  D  PNGR++ +G  
Subjt:  DMHNYLTSD-DRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNH

Query:  LPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNY
          +DS+ RPGRE  PLPPD SNTLYVEGLP + SRREV+HIFRPFVGY+E+R V+++SKHR GDP +LCFVDF N ACAATA+SALQ Y++DE +P+S  
Subjt:  LPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKIDEQDPESNY

Query:  LRLQFSRHPGPRSGSGSG
        LRLQF R+PGPR G   G
Subjt:  LRLQFSRHPGPRSGSGSG

AT1G76940.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.6e-5051.34Show/hide
Query:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP
        E P+S ++ GH    Y   +D      V DT+TIGSAYDRYLQSVQ     SGE    G + MGR           +      D  ++ R   +  D  P
Subjt:  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNRMPGPLLPDPIVMSRPPAVSPDLAP

Query:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK
        NG  + +    PV      GR    LP DASNTLYVEGLP + SRREVAHIFRPFVGY+E+R V+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+
Subjt:  NGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYK

Query:  IDEQDPESNYLRLQFSRHPGPRSG
        +DE + +S +LRLQFSR PG R G
Subjt:  IDEQDPESNYLRLQFSRHPGPRSG

AT1G76940.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.0e-4259.57Show/hide
Query:  DPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDF
        D  ++ R   +  D  PNG  + +    PV      GR    LP DASNTLYVEGLP + SRREVAHIFRPFVGY+E+R V+K+SKHR GDP++LCFVDF
Subjt:  DPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDF

Query:  ANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSG
         NPACAATA+SALQGY++DE + +S +LRLQFSR PG R G
Subjt:  ANPACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGCTTGGAGCGGAGAGCTAGAGAGACAAAAATCAATGCAATGGCAATTGCGTGGCATCATCCTCAATAGGAATTATGCCCTGCTTTCACTCTCTGCAGAACTTCC
AGCCTCTGGATTGTCTACCGGACATGATATGCACAATTATTTAACAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGTTCGGCATATGATC
GTTATCTCCAGAGTGTGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTAGGAACAGA
ATGCCTGGGCCATTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCCAATGGTCGAAATCTTGAGTATGGTAATCATCTTCCTGT
AGATTCGATGAGCAGACCTGGACGTGAAACTGTCCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGCGGGAAGTAGCTC
ATATTTTCCGCCCCTTTGTGGGATATAAAGAATTAAGATTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCA
GCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATCGATGAACAAGATCCCGAATCTAATTATTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTC
AGGTTCTGGATCTGGCGGCAAAAGTGGTACTATTGTAACGAATAGAGCAACATGGTTGACAAGTGCTATAGCAGGAATTTGGAGAGTTCCTGCGTCCTCCAACACACCAA
AATCAGCCTATATCGCTGGTCATTCCACATACGAATCTGTGGCACCGCAGGGATCAAATGCTTCAATCCGGTCCACAACGGAAAGGATGAAATCACATTCTTTGATTTCT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGCTTGGAGCGGAGAGCTAGAGAGACAAAAATCAATGCAATGGCAATTGCGTGGCATCATCCTCAATAGGAATTATGCCCTGCTTTCACTCTCTGCAGAACTTCC
AGCCTCTGGATTGTCTACCGGACATGATATGCACAATTATTTAACAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGTTCGGCATATGATC
GTTATCTCCAGAGTGTGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTAGGAACAGA
ATGCCTGGGCCATTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCCAATGGTCGAAATCTTGAGTATGGTAATCATCTTCCTGT
AGATTCGATGAGCAGACCTGGACGTGAAACTGTCCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGCGGGAAGTAGCTC
ATATTTTCCGCCCCTTTGTGGGATATAAAGAATTAAGATTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCA
GCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATCGATGAACAAGATCCCGAATCTAATTATTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTC
AGGTTCTGGATCTGGCGGCAAAAGTGGTACTATTGTAACGAATAGAGCAACATGGTTGACAAGTGCTATAGCAGGAATTTGGAGAGTTCCTGCGTCCTCCAACACACCAA
AATCAGCCTATATCGCTGGTCATTCCACATACGAATCTGTGGCACCGCAGGGATCAAATGCTTCAATCCGGTCCACAACGGAAAGGATGAAATCACATTCTTTGATTTCT
TAAATGAAAAAACAAGAAGGCTATATACGCACCACACTGTTTTGATGACTAACCACAACAAAATCTTCTCCTTCAACTGACGGTGAGCTCCTTCTCCAAATCTTCCTTCC
TTGGTACGACTCTCACAAACATTCATGATTTTTAGAGAACCCTTTAAAATTGGGAGAACATTTTCTAGAGAAAATCTATGCAGAATGGTTGTGCATAGTGCATAAATTTG
ATGAATAACTCTCACAAACATTGTGCAGATATTTCGTGTACAAAGGGCTCCCTGGGC
Protein sequenceShow/hide protein sequence
MGAWSGELERQKSMQWQLRGIILNRNYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVRNR
MPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRFVSKESKHRGGDPLILCFVDFANP
ACAATAMSALQGYKIDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRATWLTSAIAGIWRVPASSNTPKSAYIAGHSTYESVAPQGSNASIRSTTERMKSHSLIS