; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G18440 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G18440
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr6:16805493..16808127
RNA-Seq ExpressionCSPI06G18440
SyntenyCSPI06G18440
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-3974.55Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLHDELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFE
        CT+ RWR FE
Subjt:  CTNVRWRSFE

KAA0046717.1 retrotransposon protein [Cucumis melo var. makuwa]5.0e-4074.77Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCFTILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFEV
        CT+ RWR FEV
Subjt:  CTNVRWRSFEV

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-3974.55Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLHDELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFE
        CT+ RWR FE
Subjt:  CTNVRWRSFE

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-4065.65Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCFTILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFEVRAKITYGFFLLGTYPNSKSS
        CT+ RWR FE       G ++    P S  S
Subjt:  CTNVRWRSFEVRAKITYGFFLLGTYPNSKSS

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-3973.64Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFE
        CT+ RWR FE
Subjt:  CTNVRWRSFE

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein9.2e-4074.55Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLHDELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFE
        CT+ RWR FE
Subjt:  CTNVRWRSFE

A0A5A7TXV1 Retrotransposon protein2.4e-4074.77Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCFTILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFEV
        CT+ RWR FEV
Subjt:  CTNVRWRSFEV

A0A5A7TXW1 Retrotransposon protein9.2e-4074.55Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLHDELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFE
        CT+ RWR FE
Subjt:  CTNVRWRSFE

A0A5A7VG29 Retrotransposon protein1.6e-3973.64Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCF ILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFE
        CT+ RWR FE
Subjt:  CTNVRWRSFE

A0A5D3BZB1 Retrotransposon protein1.4e-4065.65Show/hide
Query:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST
        MIH SDLVC+QST MDRRCFTILCHLLRT AGL  TEVVDVEEMVA+FLH+LAHDVKNR IQR+F+RS ET+SRHFN+VL+ ++RLH+ELL +PQP+ + 
Subjt:  MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTST

Query:  CTNVRWRSFEVRAKITYGFFLLGTYPNSKSS
        CT+ RWR FE       G ++    P S  S
Subjt:  CTNVRWRSFEVRAKITYGFFLLGTYPNSKSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein5.4e-0840.28Show/hide
Query:  CQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVL
        C Q   M   CFT LC++L+T   L+ T  + +EE VA+FL +  H+   R +  +F R+ ETV R F  VL
Subjt:  CQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVL

AT5G28730.1 unknown protein1.2e-0734.44Show/hide
Query:  IHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELL
        I+++++ CQ    M    FT LC +L  + GL+ +  + ++E VAIFL + A +   R I  +F  + ET+ R F+ VL  M RL  E +
Subjt:  IHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELL

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.2e-1136.84Show/hide
Query:  CQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTN
        C ++  MD+  F  LC LL+TR  L  T  + +E  +AIFL ++ H+++ R +Q  F  S ET+SRHFN VL  ++ +  +   QP   + T  N
Subjt:  CQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACACGCGTCTGACCTTGTGTGTCAGCAAAGTACGTGGATGGACAGACGATGTTTCACAATTTTGTGTCATCTACTACGAACAAGGGCCGGTTTAGAATTGACGGA
AGTCGTCGACGTTGAGGAGATGGTCGCTATCTTCCTTCATGTGCTGGCGCACGATGTGAAGAACCGCCAGATTCAAAGGAAGTTCGTACGGTCCGATGAGACAGTCTCAC
GACATTTCAACATTGTCTTGATGGTCATGCTTCGTCTGCATGACGAGTTATTGGCTCAACCACAGCCTATGACGAGCACATGCACAAATGTGAGGTGGCGGTCTTTTGAG
GTTAGGGCTAAAATAACTTACGGTTTTTTTTTACTTGGAACTTATCCAAACTCTAAATCGTCGTTCGATATTCGCTGCAGAATTTCCTAG
mRNA sequenceShow/hide mRNA sequence
GTTGAATGAAACTTCCTTTAGATGTGTTGTTGAACTTCTCGGTGCTCTGTCATAGACAAATAGCTGTGTTTTTTTTTCATTTAGTTGCATATGTTTCCTTCATTCGACCT
GTTGAAGTACGACGAGTTTCTGTTACCATATTTTTTCATCTGTTGAAGGAGGTTGAACTTCTCAACTTGTTGTATTTTCTGTTTGTGTGCATTATATATATACATCCCAT
GTTTAATTTTTTGTTGTTAAAGACCAATCTCATGTCCTGTACTATGCTTTGATGGTCACATATGCCTACTGTTTTCTTCTTCTTGCTCTCTGACCTATTTTGTCTCTCTT
TGACCATAATACTGATTCATTTGTGTTGTCTACTCCATTTATGACATTAACAATAGCTGTACTTATTTGGTATGGTCTTTAATGGAGCATTGACTTGTGATTTTTACTCC
TCCATACACACCTTGTGTGTAGTTGGCATGTGCGGTATCGTGTTTTCCCTTTTGCATATTCATGTCACAACATTTGATCGCCGTGCTACATTCCACTTCTTAACTTGTGT
TTGACTTTGTGTGCGTGTCATGCCTTTCATATCACCGCATTTGATGACATTTTGTACGTGACGATTATTTCACATACGTATGAAGTTTGATTTTCTGATATTGAACGAAC
TTCCTTCCTCTAAGGCACAAAAAAAGAAGAAAAACTTTCGGTATATATTTTTGTTTATATTTTTTGGGTGCATGTAACTTTAACAGTTTGTTATTTGTCATACCTACATA
ATGGTAGGTCTAAAGTCAAAGGTATACGTCCACGTCCTTTTCCATATTTTGGTTTATAGCTTCTTACCATTCCCTTCACCGTTAGCAGGTTCTCCCTTCATAGTAGCTAA
AAATTGGATCCAAACGAAATCGTCGTCGTTGTCTTTTCCTTCGCAATCACCCAACGACAGATGCTAATGATATTGGAGGCACTGTTGAATGATGACAAGAGGATAACTCA
AATACTAGCCGACACTAGAAATAGGATTAGGCACCTAGCGTACTTTAGAATATAATGATACACGCGTCTGACCTTGTGTGTCAGCAAAGTACGTGGATGGACAGACGATG
TTTCACAATTTTGTGTCATCTACTACGAACAAGGGCCGGTTTAGAATTGACGGAAGTCGTCGACGTTGAGGAGATGGTCGCTATCTTCCTTCATGTGCTGGCGCACGATG
TGAAGAACCGCCAGATTCAAAGGAAGTTCGTACGGTCCGATGAGACAGTCTCACGACATTTCAACATTGTCTTGATGGTCATGCTTCGTCTGCATGACGAGTTATTGGCT
CAACCACAGCCTATGACGAGCACATGCACAAATGTGAGGTGGCGGTCTTTTGAGGTTAGGGCTAAAATAACTTACGGTTTTTTTTTACTTGGAACTTATCCAAACTCTAA
ATCGTCGTTCGATATTCGCTGCAGAATTTCCTAGGGGCATTAGACGGCACATACATCAAAGTTAACGTGTCCGCAGCTGATTGACCAAGGTATCAAACCCCAAAGGGCGA
AGTGGCAACGAATGTCCTTGGTGTTTGTGATACAAAGGGGGACTTTGTTTTCGTCTTAGTCGGCTAGGAAGGATTCGTTGCGGACTCGCGTATCCTACGAAATGCAATTT
CCCGACTTAATGATCTGAAGGTTCCAAAAGGTGAGATCATATGTTTCCACTAACCCACGCTAAATAAGTTTGAAATCTGTTTTTTTCCTTTAATTAACGGCTCGACACTA
TGCAACCTCATATCTCCAGGGTTTTACTACTTGTGTGACGTGGGATACCCAAAGGCAGAGGGTTTTCTGGCGCCATATACAGGGCAAAAATATCATCTATAAGAGTGACG
TGGTGTCGGGAATGCTCCAACAACACCGAAGGAGTTCTTCAACATGAAACATTCTTCTGCACCAAATGTCATTGAAAGAGCATTCGGGTTGTTGAAGGGTCGATGGGCAA
TACTACGAGGAAATTCCCACTACTTGGTTCAAGTCTAATGTCGAACTATTATGGCTTGTCTCCTCCATAATTTAATAAATCAGGAGATGGCGAACGCTAACATATTGGAT
GACAAAGACGAGGGTGACTCAACACATGCAACTTCTAGTGGTGACGAAATCAACTACATTGAGGTCTCAAACAAATGGACTCAATGGAGGGATGTCCTTGCAGAGTTGAT
GTTCAACGAATGACAGTTGTGTAACGACGAGTTGTTGTACGTCTTTGGGAAAAACCCTGCAACAAGGGCCCATGCAGAGACGTTTGCGGACATTGGGTCTAACGTGCCAG
GACCCAACGTCGGTGTCTCCACGAAGGATGGTCTCGAGACGGAGTTCCCAGCTATGTGCAGTTCGAGGATGAACCTCTTGTCGGACGACATGATGATCGGACGATCTAAT
AGGTCCAGCGACTGTAGGTTGGGTTTTAGCGGTCAAAAAAGAAAGTGCGACATGCAGACGCTCGAGACTTACGACCATATTTGGGATGCTATGGACACTGCGAATGATCA
ACTTAGGGCCATTGCAGAAAGGCCAAATAGAGGTAGCCAGAAAGAAGACACAATGATGCAGGAGGTCATGATGCATATGTAGTCTATTCCGGACCTTAGTATGGA
Protein sequenceShow/hide protein sequence
MIHASDLVCQQSTWMDRRCFTILCHLLRTRAGLELTEVVDVEEMVAIFLHVLAHDVKNRQIQRKFVRSDETVSRHFNIVLMVMLRLHDELLAQPQPMTSTCTNVRWRSFE
VRAKITYGFFLLGTYPNSKSSFDIRCRIS