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CSPI06G18530 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G18530
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr6:16856507..16856819
RNA-Seq ExpressionCSPI06G18530
SyntenyCSPI06G18530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040616.1 hypothetical protein E6C27_scaffold262G001930 [Cucumis melo var. makuwa]4.3e-1352Show/hide
Query:  WSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE
        W + E LA  KLGNGRR+ FW D W  D+P  +++P LFRIA LPNGST  H DT T  W+ +  R LK +E P+
Subjt:  WSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE

KAA0059964.1 hypothetical protein E6C27_scaffold340G00030 [Cucumis melo var. makuwa]3.4e-1048.05Show/hide
Query:  KFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE
        + W   +SLA+ KLGNG RI F  DLW  + P K ++  LF+IA LPNGS   H D +T  W+   RR LKD+E  E
Subjt:  KFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE

TYK00776.1 hypothetical protein E5676_scaffold420G00430 [Cucumis melo var. makuwa]7.6e-1050.67Show/hide
Query:  MLRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQ---DTDTGLW
        M + P  S  + W   E L   KLGNG RI FW DLW   LP  +RYP LFRIA LPNGS   H      D GLW
Subjt:  MLRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQ---DTDTGLW

TYK22579.1 hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa]1.3e-1247.67Show/hide
Query:  LRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE
        LR P  S  + W   E LA  KLGNGRR+ FW D W  ++P K +   LF+IA LP GS   H D+DT  W  + RR LKDEE  +
Subjt:  LRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]1.9e-1350.6Show/hide
Query:  LRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEE
        L+ P  S  K W   E LA  KLGNG RI FWLD W    PF + +  LFRI +LPNGS  DH D +   W+   RR LKDEE
Subjt:  LRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEE

TrEMBL top hitse value%identityAlignment
A0A5D3BDZ2 Uncharacterized protein1.7e-1048.05Show/hide
Query:  KFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE
        + W   +SLA+ KLGNG RI F  DLW  + P K ++  LF+IA LPNGS   H D +T  W+   RR LKD+E  E
Subjt:  KFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE

A0A5D3BL11 Uncharacterized protein6.3e-1048.61Show/hide
Query:  LRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWN
        LR P  S  + W   ESLA+ +L NGRRI FW D W    P  V++P LFRIA LP GS   H D+ T  W+
Subjt:  LRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWN

A0A5D3BR86 Uncharacterized protein3.7e-1050.67Show/hide
Query:  MLRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQ---DTDTGLW
        M + P  S  + W   E L   KLGNG RI FW DLW   LP  +RYP LFRIA LPNGS   H      D GLW
Subjt:  MLRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQ---DTDTGLW

A0A5D3C2U2 Uncharacterized protein2.1e-1352Show/hide
Query:  WSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE
        W + E LA  KLGNGRR+ FW D W  D+P  +++P LFRIA LPNGST  H DT T  W+ +  R LK +E P+
Subjt:  WSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE

A0A5D3DH32 Uncharacterized protein6.1e-1347.67Show/hide
Query:  LRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE
        LR P  S  + W   E LA  KLGNGRR+ FW D W  ++P K +   LF+IA LP GS   H D+DT  W  + RR LKDEE  +
Subjt:  LRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGAGGCCCTTTGGCTAGTAGATTAAAATTTTGGAGCATATTTGAATCACTAGCAATTCTTAAATTAGGAAATGGAAGAAGAATCTTCTTTTGGCTTGATTTATG
GTGTCCGGATCTTCCTTTTAAAGTGAGATATCCAGGACTTTTCCGCATTGCTTCACTACCTAATGGAAGTACAAATGATCATCAGGACACAGATACTGGTTTGTGGAATT
CACTCCCTCGAAGGCAACTAAAAGATGAGGAATTCCCAGAACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGAGGCCCTTTGGCTAGTAGATTAAAATTTTGGAGCATATTTGAATCACTAGCAATTCTTAAATTAGGAAATGGAAGAAGAATCTTCTTTTGGCTTGATTTATG
GTGTCCGGATCTTCCTTTTAAAGTGAGATATCCAGGACTTTTCCGCATTGCTTCACTACCTAATGGAAGTACAAATGATCATCAGGACACAGATACTGGTTTGTGGAATT
CACTCCCTCGAAGGCAACTAAAAGATGAGGAATTCCCAGAACTCTAGCAACTACTTTGTAGCATAGAAGGCACAAGTCCATCTCAAGTGCCTG
Protein sequenceShow/hide protein sequence
MLRGPLASRLKFWSIFESLAILKLGNGRRIFFWLDLWCPDLPFKVRYPGLFRIASLPNGSTNDHQDTDTGLWNSLPRRQLKDEEFPEL