; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G19320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G19320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNuclear transcription factor Y subunit C
Genome locationChr6:17467787..17468206
RNA-Seq ExpressionCSPI06G19320
SyntenyCSPI06G19320
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]7.9e-6295.62Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

XP_004144200.1 DNA polymerase epsilon subunit C [Cucumis sativus]1.2e-6599.28Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES
        AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]3.9e-6195.62Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]8.2e-5991.24Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAE AAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]2.4e-5891.91Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEESG+AIRPEFPTGRVKKIMKLDKDI KVNSEALFLVSCATELFLKLLAEKSAE AAEKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP QPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAE
        AKDENRTR VVDKV PEGTRRIDDFFRR  KT SAE
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAE

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein5.7e-6699.28Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES
        AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAETES

A0A1S3BDL4 dr1-associated corepressor1.9e-6195.62Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDA 
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

A0A5A7VG98 Dr1-associated corepressor3.8e-6295.62Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAE AAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENR RAVVDKVAP GTRRIDDFFRR TKT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

A0A6J1HCT3 DNA polymerase epsilon subunit C2.6e-5889.78Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

A0A6J1K737 DNA polymerase epsilon subunit C4.0e-5991.24Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAE AAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAP
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRAVVDKVAPEGTRRIDDFFRRSTKTKSAET

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A6.8e-0832.76Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDENRTR
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++ + 
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDENRTR

Query:  AVVDKVAPEGTRRIDD
                 G RR  D
Subjt:  AVVDKVAPEGTRRIDD

Q14919 Dr1-associated corepressor8.3e-0636Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +    +  KT+   H++  ++  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLD

Q2YDP3 Dr1-associated corepressor8.3e-0636Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLD
        FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +    +  KT+   H++  ++  +   DFL D
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLD

Q4X095 NCT transcriptional regulatory complex subunit A6.8e-0832.76Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDENRTR
        ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D++ + 
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSL-PLPSQPSDAPAKDENRTR

Query:  AVVDKVAPEGTRRIDD
                 G RR  D
Subjt:  AVVDKVAPEGTRRIDD

Q9W256 DNA polymerase epsilon subunit 41.3e-0639.13Show/hide
Query:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAV
        EA   + P  R++ IMKLD D+   N+EA+F+V+ A ELF+  L+ +S    A+ K+KT++   + MA+
Subjt:  EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAV

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C107.0e-0831.87Show/hide
Query:  EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLP
        EE++ G E  + +FP  R+++IM+ D    ++  +A+FLV+ ATE+F++  +E++ +S+ + K+K +  +H+   V   +   +FL DS+P
Subjt:  EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C119.1e-0841.1Show/hide
Query:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFL
        FP  R+KKIM+ D+D+GK+      LVS + ELFL+ L +++ E   E+  KTV   H++  V+R+ ++ DFL
Subjt:  FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFL

AT5G19490.1 Histone superfamily protein5.9e-0732.38Show/hide
Query:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRT--
        ++  FP  R+KKIM+ D+++GK+      LVS A ELFL+ L   + +    +  KTV   H++  V+   ++ DFL D++        +  +D++ T  
Subjt:  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRT--

Query:  RAVVD
        R VVD
Subjt:  RAVVD

AT5G27910.1 nuclear factor Y, subunit C83.8e-0636.79Show/hide
Query:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVD
        + P  R+KKIMK D D+  + SEA  L+S A E+F+  L  +S   A E KR T++  ++  AV +   I DFLLD      + S A A D      + D
Subjt:  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVD

Query:  KVAPEG
           P G
Subjt:  KVAPEG

AT5G43250.1 nuclear factor Y, subunit C134.7e-3663.31Show/hide
Query:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP
        MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA   AEKKRKTV L+H+R+AVKRH+  SDFLLDSLPLP+QP    
Subjt:  MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAP

Query:  AKDENRTRAVVDK---VAPEGTRRIDDFFRR-STKTKSA
              T++V DK     P GTRRIDDFF +   KT SA
Subjt:  AKDENRTRAVVDK---VAPEGTRRIDDFFRR-STKTKSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGAGGAGTCCGGCGAGGCTATCCGACCGGAATTTCCGACAGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTT
GTTTCTAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAA
TGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTT
GTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGAGGAGTCCGGCGAGGCTATCCGACCGGAATTTCCGACAGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGGCAAAGTGAATTCAGAAGCCTT
GTTTCTAGTTTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAATCCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAA
TGGCCGTCAAAAGGCATCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCGCTGTT
GTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGTCAACTAAGACAAAGTCGGCGGAGACCGAGTCATAG
Protein sequenceShow/hide protein sequence
MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAAEKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAV
VDKVAPEGTRRIDDFFRRSTKTKSAETES