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CSPI06G20550 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G20550
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionsmall RNA degrading nuclease 5
Genome locationChr6:18647019..18650608
RNA-Seq ExpressionCSPI06G20550
SyntenyCSPI06G20550
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059832.1 small RNA degrading nuclease 5 [Cucumis melo var. makuwa]3.2e-10297.5Show/hide
Query:  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS
        GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS
Subjt:  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS

Query:  LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH
        LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSICREKIVK+LEELHAQAEVALCFVCTKH
Subjt:  LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH

XP_004146782.1 small RNA degrading nuclease 5 [Cucumis sativus]4.1e-10597.57Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTKH
        FVCTKH
Subjt:  FVCTKH

XP_008466693.1 PREDICTED: small RNA degrading nuclease 5 [Cucumis melo]2.5e-10295.15Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSICREKIVK+LEELHAQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTKH
        FVCTKH
Subjt:  FVCTKH

XP_023525579.1 small RNA degrading nuclease 5-like [Cucurbita pepo subsp. pepo]1.0e-9285.92Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GP+FGSPPSLIRKKLL ILGE+GKTSSFIDD++TVKRY SESSHAFPVTSDDEALSRAKKE MNE+VHFIWTQFSELNSYHKKQVDDEE+LNVK
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAELLSLLTCD+KS NKKRN  KISVEL+EIL+RMDSRI DLYTSLPTNAMLI+CTGHGDI LVQRLRKML+EQSET ICREKIVK+LEELHAQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTKH
        F   KH
Subjt:  FVCTKH

XP_038886453.1 small RNA degrading nuclease 5 [Benincasa hispida]1.1e-9790.78Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GPDFGSPPSLIRKKLLNILGESGKTSSFID+I+TVKRY SES+HAFPVTSDDEALSRAKKEAMNE+VHFIWTQFSELNSYHKKQ DDEE+LNVK
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAELLSLLTCDTK+VNKKRN  KIS EL+EILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTKH
        FVC KH
Subjt:  FVCTKH

TrEMBL top hitse value%identityAlignment
A0A0A0KDV5 Uncharacterized protein2.6e-105100Show/hide
Query:  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS
        GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS
Subjt:  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS

Query:  LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH
        LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH
Subjt:  LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH

A0A1S3CT45 small RNA degrading nuclease 51.2e-10295.15Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSICREKIVK+LEELHAQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTKH
        FVCTKH
Subjt:  FVCTKH

A0A5A7UVD4 Small RNA degrading nuclease 51.6e-10297.5Show/hide
Query:  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS
        GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS
Subjt:  GPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLS

Query:  LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH
        LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSICREKIVK+LEELHAQAEVALCFVCTKH
Subjt:  LLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH

A0A5D3DMF7 Small RNA degrading nuclease 51.2e-10295.15Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GPDFGSPPSLIRKKLLNILGE GKTSSFIDDI+TVKRY SESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDI LVQRLRKMLQEQSETSICREKIVK+LEELHAQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTKH
        FVCTKH
Subjt:  FVCTKH

A0A6J1EE80 small RNA degrading nuclease 5-like5.1e-9385.92Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GP+FGSPPSLIRKKLL +LGE+GKTSSFIDD++TVKRY SESSHAFPVTSDDEALSRAKKE MNE+VHFIWTQFSELNSYHKKQVDDEE+LNVK
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAELLSLLTCD+KSVNKKRN  KISVEL+EIL+RMD RI DLYTSLPTNAMLI+CTGHGDI LVQRLRKML+EQSET ICREKIVKILEELHAQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTKH
        F   KH
Subjt:  FVCTKH

SwissProt top hitse value%identityAlignment
Q8L7M4 Small RNA degrading nuclease 55.3e-6360Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GPDFGSPP +IRKKLL +L ESGKT+S ID+I  VKRY SESS+A PV+SDDEALS+A KE  N++  F+WTQFSELN++ + + DD +KLN +
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAE++SLLTC+ KS  KK N   +S E +EIL +M+ R+  LY +LPTNAM I+CTGHGD ++V R+RKML+++ E    REK+VK+LEEL AQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTK
        FV  K
Subjt:  FVCTK

Arabidopsis top hitse value%identityAlignment
AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.7e-6460Show/hide
Query:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK
        L+ +  GPDFGSPP +IRKKLL +L ESGKT+S ID+I  VKRY SESS+A PV+SDDEALS+A KE  N++  F+WTQFSELN++ + + DD +KLN +
Subjt:  LVPLPIGPDFGSPPSLIRKKLLNILGESGKTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVK

Query:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC
        LAE++SLLTC+ KS  KK N   +S E +EIL +M+ R+  LY +LPTNAM I+CTGHGD ++V R+RKML+++ E    REK+VK+LEEL AQAEVALC
Subjt:  LAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRINDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALC

Query:  FVCTK
        FV  K
Subjt:  FVCTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTTGTGAAACAAGTCTAATGCCCAGAGAATTAATCAAGTTTAAAGCTGAAAGTGCTCTTAGAATTTGGTTTTGGGAGGACATGACATCTAGATTAGGCATCCT
CCCGCGGCTTGCGATCTCCTTGGTGAAAGAAATCTGGAAGTTCAAGGTTCTCAAAAAAGTGAAAATTTTTCCTCCTGATGATATTGTATTGATGTATAAACACAACAGAG
AAGCTCCAAGGGATGTTCCCTTCTTGGTACCTTTACCCATAGGACCAGACTTTGGTTCACCTCCATCATTAATCCGAAAGAAACTACTTAATATACTTGGTGAGAGTGGA
AAGACATCTTCTTTCATTGATGATATTGCAACGGTGAAGAGATATTGCTCTGAATCATCACATGCATTTCCTGTAACTTCTGATGATGAAGCTCTTTCAAGGGCAAAAAA
GGAGGCAATGAATGAGAAAGTTCACTTCATCTGGACACAGTTTTCAGAATTAAATTCTTACCATAAGAAGCAGGTAGATGATGAAGAAAAATTAAATGTCAAGCTTGCAG
AGTTGCTGTCATTGCTTACGTGTGATACAAAATCTGTCAACAAGAAAAGGAATAGGGCCAAGATCTCTGTTGAACTGCAGGAAATTTTGGCTCGCATGGATTCTAGAATC
AATGACCTCTATACCTCATTACCTACTAATGCTATGCTTATCATTTGCACTGGTCATGGCGACATAACACTTGTACAGAGATTGAGAAAAATGCTACAAGAGCAGAGTGA
AACAAGCATATGCCGTGAGAAGATTGTTAAGATATTGGAAGAGCTCCATGCCCAAGCTGAAGTAGCTTTGTGTTTTGTATGTACAAAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATTTGTGAAACAAGTCTAATGCCCAGAGAATTAATCAAGTTTAAAGCTGAAAGTGCTCTTAGAATTTGGTTTTGGGAGGACATGACATCTAGATTAGGCATCCT
CCCGCGGCTTGCGATCTCCTTGGTGAAAGAAATCTGGAAGTTCAAGGTTCTCAAAAAAGTGAAAATTTTTCCTCCTGATGATATTGTATTGATGTATAAACACAACAGAG
AAGCTCCAAGGGATGTTCCCTTCTTGGTACCTTTACCCATAGGACCAGACTTTGGTTCACCTCCATCATTAATCCGAAAGAAACTACTTAATATACTTGGTGAGAGTGGA
AAGACATCTTCTTTCATTGATGATATTGCAACGGTGAAGAGATATTGCTCTGAATCATCACATGCATTTCCTGTAACTTCTGATGATGAAGCTCTTTCAAGGGCAAAAAA
GGAGGCAATGAATGAGAAAGTTCACTTCATCTGGACACAGTTTTCAGAATTAAATTCTTACCATAAGAAGCAGGTAGATGATGAAGAAAAATTAAATGTCAAGCTTGCAG
AGTTGCTGTCATTGCTTACGTGTGATACAAAATCTGTCAACAAGAAAAGGAATAGGGCCAAGATCTCTGTTGAACTGCAGGAAATTTTGGCTCGCATGGATTCTAGAATC
AATGACCTCTATACCTCATTACCTACTAATGCTATGCTTATCATTTGCACTGGTCATGGCGACATAACACTTGTACAGAGATTGAGAAAAATGCTACAAGAGCAGAGTGA
AACAAGCATATGCCGTGAGAAGATTGTTAAGATATTGGAAGAGCTCCATGCCCAAGCTGAAGTAGCTTTGTGTTTTGTATGTACAAAACATTGATTAGTAAAATCCTAAA
TCTCTCATCAATTTTGATCCTTTGATGTAATATATCATAATTTAAGATTCGAACTTTTTGGTCGATGAAACTATACTGAAGTTGATACATCCTACATGCACCTAGACCCA
CACGTTGGTAGAAATCACAAATATGACAACTGAAAATTTGTAATTTATAATTATCATAGGTTGTTTTATATCGGAAGCTCAAATTCATCGACTTTGAAATTGTCACCTGT
C
Protein sequenceShow/hide protein sequence
MEICETSLMPRELIKFKAESALRIWFWEDMTSRLGILPRLAISLVKEIWKFKVLKKVKIFPPDDIVLMYKHNREAPRDVPFLVPLPIGPDFGSPPSLIRKKLLNILGESG
KTSSFIDDIATVKRYCSESSHAFPVTSDDEALSRAKKEAMNEKVHFIWTQFSELNSYHKKQVDDEEKLNVKLAELLSLLTCDTKSVNKKRNRAKISVELQEILARMDSRI
NDLYTSLPTNAMLIICTGHGDITLVQRLRKMLQEQSETSICREKIVKILEELHAQAEVALCFVCTKH