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CSPI06G20560 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G20560
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionsmall RNA degrading nuclease 5
Genome locationChr6:18656565..18657870
RNA-Seq ExpressionCSPI06G20560
SyntenyCSPI06G20560
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004527 - exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR034922 - RNA exonuclease 1-like, exonuclease domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025022.1 Small RNA degrading nuclease 5 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-4892.73Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SGITCEML+ VTTSLEDVQ+ FLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQS NGHDS+EDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

XP_004146782.1 small RNA degrading nuclease 5 [Cucumis sativus]5.0e-5298.18Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        +YSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMAL+ISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

XP_008466693.1 PREDICTED: small RNA degrading nuclease 5 [Cucumis melo]1.2e-5096.36Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SGITCEMLSGVTTSLEDVQR FLNLVHKETVLVGHSLENDL+ALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

XP_023534811.1 small RNA degrading nuclease 5-like [Cucurbita pepo subsp. pepo]1.2e-4892.73Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SGITCEML+ VTTSLEDVQ+ FLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQS NGHDS+EDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

XP_038886453.1 small RNA degrading nuclease 5 [Benincasa hispida]2.3e-4994.55Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SGITCEMLS VTTSL+DVQR FLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLS+EIQQSGNGHDSIEDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

TrEMBL top hitse value%identityAlignment
A0A0A0KFV7 Exonuclease domain-containing protein1.6e-6799.26Show/hide
Query:  MFVHELVVRVKFLAYLSVNASCPVCQYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRIL
        MFVHELVVRVKFLAYLSVNASCPVCQYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMAL+ISHDLVVDTAVLYKHPRGGSHKSALRIL
Subjt:  MFVHELVVRVKFLAYLSVNASCPVCQYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRIL

Query:  AKRFLSREIQQSGNGHDSIEDARATMELALLKIKH
        AKRFLSREIQQSGNGHDSIEDARATMELALLKIKH
Subjt:  AKRFLSREIQQSGNGHDSIEDARATMELALLKIKH

A0A1S3CT45 small RNA degrading nuclease 56.0e-5196.36Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SGITCEMLSGVTTSLEDVQR FLNLVHKETVLVGHSLENDL+ALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

A0A5D3DMF7 Small RNA degrading nuclease 56.0e-5196.36Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SGITCEMLSGVTTSLEDVQR FLNLVHKETVLVGHSLENDL+ALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

A0A6J1EE80 small RNA degrading nuclease 5-like1.2e-4890.91Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SGIT EMLS VTTSLEDVQ++FLNLVHKETVL+GHSLENDLMALKISHDLV+DTAVLYKHPRGGSHKSALRIL K+FLSREIQQSGNGHDSIEDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

A0A6J1J229 small RNA degrading nuclease 5-like1.6e-4890.91Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SGIT EMLS VTTSLEDVQ++FLNLVHKETVL+GHSLENDLMALKISHDLV+DTAVLYKHPRGGSHKSALRIL K+FLSREIQQSGNGHDSIEDARAT
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        MELALLKIKH
Subjt:  MELALLKIKH

SwissProt top hitse value%identityAlignment
O94443 Uncharacterized exonuclease C637.095.6e-2251.33Show/hide
Query:  VCQYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGN-GHDSIEDA
        V QYSGIT E L  VTT L DVQ      V   TVL+GHSL +DL  LK +H  ++DTA +Y H RG   K +L+ LA ++L REIQ++G  GHDS EDA
Subjt:  VCQYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGN-GHDSIEDA

Query:  RATMELALLKIKH
         A ++L  LK+K+
Subjt:  RATMELALLKIKH

P53331 RNA exonuclease 11.1e-2048.18Show/hide
Query:  QYSGITCEMLS-GVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNG-HDSIEDAR
        +YSGIT E L+ G   +L +VQ+  L ++ +  +L+GHSL+NDL  +K+ H LVVDTA++Y H  G   K +L+ L++ FL++ IQ   NG HDS+EDAR
Subjt:  QYSGITCEMLS-GVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNG-HDSIEDAR

Query:  ATMELALLKI
        A +EL  LKI
Subjt:  ATMELALLKI

Q7TT28 RNA exonuclease 1 homolog2.0e-1943.36Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SG+T   L   + +L DVQ + L++   +T+L+GHSLE+DL+ALK+ H  VVDT+VL+ H  G  +K +LR L   +L + IQ + +GH S EDA A 
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKHDTR
        M L + KI+ D +
Subjt:  MELALLKIKHDTR

Q8L7M4 Small RNA degrading nuclease 51.3e-3971.82Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        +YSGIT  M+ GVTT+L+D+Q  FL LV KET+LVGHSLENDL++LKISH+LV+DTAVLYKHP G S+K+ LRILAK+FL+REIQ+S +GHDS EDA+A 
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        M+LALLKIKH
Subjt:  MELALLKIKH

Q8N1G1 RNA exonuclease 1 homolog8.9e-2042.48Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        ++SG+T   L+  + +L DVQ + L++   +T+L+GHSLE+DL+ALK+ H  VVDT+VL+ H  G  +K +LR L   +L + IQ + +GH S EDA A 
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKHDTR
        M L + K++ D +
Subjt:  MELALLKIKHDTR

Arabidopsis top hitse value%identityAlignment
AT3G50100.1 small RNA degrading nuclease 12.3e-1536.89Show/hide
Query:  VNASCPVCQY----SGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGS-HKSALRILAKRFLSREIQQS
        V  + PV  Y    +GIT E +   + S+ D+Q      +   T+LVGHSL  DL  LKI H  V+DTA+++K+P      + +L  L K  L  E++++
Subjt:  VNASCPVCQY----SGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGS-HKSALRILAKRFLSREIQQS

Query:  GNGHDSIEDARATMELALLKIK
        G  HD + DA A M+LAL  ++
Subjt:  GNGHDSIEDARATMELALLKIK

AT5G05540.1 small RNA degrading nuclease 25.8e-1434.15Show/hide
Query:  VNASCPVCQY----SGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSH------KSALRILAKRFLSR
        V  + PV  Y    +G+T + L   T S+ D+Q   L  + ++T+LVG SL +DL  LK+ H  V+DT++++K+   G+       + +L  L K  L  
Subjt:  VNASCPVCQY----SGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSH------KSALRILAKRFLSR

Query:  EIQQSGNGHDSIEDARATMELAL
        E+Q+ G  H+ + DA A M+L L
Subjt:  EIQQSGNGHDSIEDARATMELAL

AT5G05540.2 small RNA degrading nuclease 25.8e-1434.15Show/hide
Query:  VNASCPVCQY----SGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSH------KSALRILAKRFLSR
        V  + PV  Y    +G+T + L   T S+ D+Q   L  + ++T+LVG SL +DL  LK+ H  V+DT++++K+   G+       + +L  L K  L  
Subjt:  VNASCPVCQY----SGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSH------KSALRILAKRFLSR

Query:  EIQQSGNGHDSIEDARATMELAL
        E+Q+ G  H+ + DA A M+L L
Subjt:  EIQQSGNGHDSIEDARATMELAL

AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.4e-4171.82Show/hide
Query:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT
        +YSGIT  M+ GVTT+L+D+Q  FL LV KET+LVGHSLENDL++LKISH+LV+DTAVLYKHP G S+K+ LRILAK+FL+REIQ+S +GHDS EDA+A 
Subjt:  QYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARAT

Query:  MELALLKIKH
        M+LALLKIKH
Subjt:  MELALLKIKH

AT5G67240.1 small RNA degrading nuclease 36.4e-1333.33Show/hide
Query:  PVCQY----SGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKH-PRGGSHKSALRILAKRFLSREIQQSGNGHD
        PV  Y    +G+T E L   T S+ D+Q+     +   T+LVGH L NDL  L+I H  V+DT+ +++      + + +L  L K  L +E++  G  H+
Subjt:  PVCQY----SGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKH-PRGGSHKSALRILAKRFLSREIQQSGNGHD

Query:  SIEDARATMELALLKIK
         + DA A M+L L  ++
Subjt:  SIEDARATMELALLKIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTGCATGAACTTGTTGTCCGGGTGAAATTCTTAGCTTACTTAAGTGTTAATGCCAGTTGCCCAGTCTGTCAGTATAGTGGAATTACATGCGAGATGTTAAGTGG
GGTGACCACTAGTCTGGAAGATGTTCAGAGAATTTTTTTAAATCTGGTTCACAAGGAGACTGTTTTAGTTGGCCATTCACTGGAGAATGACCTGATGGCATTGAAGATCT
CTCATGATCTGGTAGTTGATACTGCAGTACTTTATAAGCATCCCCGTGGCGGCTCTCATAAATCTGCCCTTCGGATTCTTGCTAAAAGATTTCTTTCCAGGGAGATTCAA
CAATCTGGAAATGGCCACGATAGTATTGAAGATGCAAGAGCTACTATGGAACTAGCACTTCTTAAAATTAAACATGACACAAGAAAAGCTTATGATAAGGTGGACAGAAA
CTTCCTTGATAAGATCCTAGAAGTTAAGAGAATCAGAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTGCATGAACTTGTTGTCCGGGTGAAATTCTTAGCTTACTTAAGTGTTAATGCCAGTTGCCCAGTCTGTCAGTATAGTGGAATTACATGCGAGATGTTAAGTGG
GGTGACCACTAGTCTGGAAGATGTTCAGAGAATTTTTTTAAATCTGGTTCACAAGGAGACTGTTTTAGTTGGCCATTCACTGGAGAATGACCTGATGGCATTGAAGATCT
CTCATGATCTGGTAGTTGATACTGCAGTACTTTATAAGCATCCCCGTGGCGGCTCTCATAAATCTGCCCTTCGGATTCTTGCTAAAAGATTTCTTTCCAGGGAGATTCAA
CAATCTGGAAATGGCCACGATAGTATTGAAGATGCAAGAGCTACTATGGAACTAGCACTTCTTAAAATTAAACATGACACAAGAAAAGCTTATGATAAGGTGGACAGAAA
CTTCCTTGATAAGATCCTAGAAGTTAAGAGAATCAGAATGTAG
Protein sequenceShow/hide protein sequence
MFVHELVVRVKFLAYLSVNASCPVCQYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALKISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQ
QSGNGHDSIEDARATMELALLKIKHDTRKAYDKVDRNFLDKILEVKRIRM