; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G20570 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G20570
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSmall RNA degrading nuclease 5
Genome locationChr6:18665473..18672191
RNA-Seq ExpressionCSPI06G20570
SyntenyCSPI06G20570
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059836.1 small RNA degrading nuclease 5 [Cucumis melo var. makuwa]1.7e-14596.68Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSSSVSGLDSEDEGKSNVGKTQEKP FFDIYGADAKAE+LFKTPESNSTLSLQDVQ+LV WVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDL NKLTSEPEISGLEKEAPISI+LPKELPFPVTYYTLTAK LEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTRQDLLELLV
        GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEG+VLLDKLVKPSNAIVDYNTRQDLLELL+
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTRQDLLELLV

KAG7037276.1 Small RNA degrading nuclease 5, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-12889.73Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSS VS LDSE+EG+SNVGKT+E PSFFDIYG DAKAEILFKTPESNSTLSLQDVQ LV WVLAEGFMP WVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        +KILPTFKK CG+PRAVLALSCISDRMQTIDALLTCKVKRKRDAN VDLKN LTSE E  G EKE PISIKLPKELPFPVTYYTLTAK LEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        GFI TLPAP G SP EMLALDCEMCVTCEGFELTRITLVDMEG+V+LDKLVKPSNAIVDYNTR
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

XP_004146782.1 small RNA degrading nuclease 5 [Cucumis sativus]8.6e-14599.24Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSSSVSGLDSED+G+SNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

XP_008466693.1 PREDICTED: small RNA degrading nuclease 5 [Cucumis melo]8.9e-14296.96Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSSSVSGLDSEDEGKSNVGKTQEKP FFDIYGADAKAE+LFKTPESNSTLSLQDVQ+LV WVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDL NKLTSEPEISGLEKEAPISI+LPKELPFPVTYYTLTAK LEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEG+VLLDKLVKPSNAIVDYNTR
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

XP_038886453.1 small RNA degrading nuclease 5 [Benincasa hispida]6.2e-13592.78Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSSSVS LD  DEGKSN GKTQEK SFFDIYG DAKAE+LFKTPESNSTLSLQDVQ LV WVLAEGFMP+WVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        SKILPTFK+FCGSPRAVLALSCISDRMQTIDALLTCKVKRKRD N VD+KNKLTSEPEISGLEKEAPISIKLPKELPFP+TYYTLTAKALEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        GFIQTLPAP G SPNEMLALDCEMCVTCEGFELTRITLVD+EGRV+LDKLVKPSNAIVDYNTR
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

TrEMBL top hitse value%identityAlignment
A0A1S3CT45 small RNA degrading nuclease 54.3e-14296.96Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSSSVSGLDSEDEGKSNVGKTQEKP FFDIYGADAKAE+LFKTPESNSTLSLQDVQ+LV WVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDL NKLTSEPEISGLEKEAPISI+LPKELPFPVTYYTLTAK LEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEG+VLLDKLVKPSNAIVDYNTR
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

A0A5A7V036 Small RNA degrading nuclease 58.4e-14696.68Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSSSVSGLDSEDEGKSNVGKTQEKP FFDIYGADAKAE+LFKTPESNSTLSLQDVQ+LV WVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDL NKLTSEPEISGLEKEAPISI+LPKELPFPVTYYTLTAK LEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTRQDLLELLV
        GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEG+VLLDKLVKPSNAIVDYNTRQDLLELL+
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTRQDLLELLV

A0A5D3DMF7 Small RNA degrading nuclease 54.3e-14296.96Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSSSVSGLDSEDEGKSNVGKTQEKP FFDIYGADAKAE+LFKTPESNSTLSLQDVQ+LV WVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDL NKLTSEPEISGLEKEAPISI+LPKELPFPVTYYTLTAK LEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEG+VLLDKLVKPSNAIVDYNTR
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

A0A6J1FAZ1 small RNA degrading nuclease 5-like7.1e-12988.72Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQE---KPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALY
        MPSSSVS LD+++EGKSNVG T+E   KPSFFDIYG DAKAE+LFKTPESNSTLSLQDVQ LV WVLAEGFMP WVFIKNKPLIPKVVMVYLPGLDAALY
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQE---KPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALY

Query:  MSQSKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPF
        MSQSKILPTFK+FCGSPR VLALSCISDRMQTIDALLTCKVKRKRDAN VDLKNKLTSE EI G EK++PISIKLPKELPFPVTYYTLTAK LEDNGYPF
Subjt:  MSQSKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPF

Query:  NQPGFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        NQPGFIQTLPAP G SP EMLALDCEMCVTCEGFELTRITLVDM G+++LDKLVKPSNAIVDYNTR
Subjt:  NQPGFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

A0A6J1J229 small RNA degrading nuclease 5-like5.4e-12989.73Show/hide
Query:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ
        MPSS VS LDSE+EG+SNVGKT+E PSFFDIYG DAKAEILFKTPESNSTLSLQDVQ LV WVLAEGFMP WVFIKNKPLIPKVVMVYLPGLDAALYMSQ
Subjt:  MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ

Query:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP
        +KILPTFKK CG+PRAVLALSCISDRMQTIDALLTCKVKRKRDAN VDLKN LTSE E  G EKE PISIKLPKELPFPVTYYTLTAK LEDNGYPFNQP
Subjt:  SKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQP

Query:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        GFI TLPAP G SP EMLALDCEMCVTCEGFELTRITLVDMEG+V+LDKLVKPSNAIVDYNTR
Subjt:  GFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

SwissProt top hitse value%identityAlignment
O94443 Uncharacterized exonuclease C637.097.3e-1426.74Show/hide
Query:  KTPESN--STLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ-------SKILPT---------FKKFCGSPRAVLALSCIS
        +T E+N    L + D+QELV W LA+G  P WV ++NK +I + V++ +PGL+ + +  Q       S +LP             FC             
Subjt:  KTPESN--STLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQ-------SKILPT---------FKKFCGSPRAVLALSCIS

Query:  DRMQT-------IDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFN---QPGFIQTLPAPEGCSP
        DR +        + + L+ + K+KRD                   E  A  S   P +       Y ++ ++  ++ YP +     G   T P+    S 
Subjt:  DRMQT-------IDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFN---QPGFIQTLPAPEGCSP

Query:  NE---------MLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
         +         +LA+DCEM  T  G E+ R+T+VDM+  V+ D+ VKP + + DY T+
Subjt:  NE---------MLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

P48778 Exonuclease GOR8.4e-1066.67Show/hide
Query:  ALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        ALDCEMC T  G ELTR+T+VD + RV+ D  VKP N IVDYNTR
Subjt:  ALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

P53331 RNA exonuclease 18.9e-1227.03Show/hide
Query:  LSLQDVQELVNWVL-AEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDL
        + ++DV+++  ++L AE   P+W+ I N+  + K++++++PGL    + +      TF +        +    I+    T   +           +K+ L
Subjt:  LSLQDVQELVNWVL-AEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKFCGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDL

Query:  KNKLTSEPEISGLEKEAPIS--IKLPKELPFPVTYYTLTAKALEDNGYPFN------QPGFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDM
         +   S   + GL K   I+   +L K+    +    L+ + L  N YP +         ++QT+    G S   + ALDCEMC++ +G  LTRI+LV+ 
Subjt:  KNKLTSEPEISGLEKEAPIS--IKLPKELPFPVTYYTLTAKALEDNGYPFN------QPGFIQTLPAPEGCSPNEMLALDCEMCVTCEGFELTRITLVDM

Query:  EGRVLLDKLVKPSNAIVDYNTR
        +  V+ ++LVKP   IVDY TR
Subjt:  EGRVLLDKLVKPSNAIVDYNTR

Q8IX06 Putative exonuclease GOR8.4e-1066.67Show/hide
Query:  ALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        ALDCEMC T  G ELTR+T+VD + RV+ D  VKP N IVDYNTR
Subjt:  ALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

Q8L7M4 Small RNA degrading nuclease 52.7e-7759.29Show/hide
Query:  DEG--KSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKF
        D+G  KSN G      SFFDIYG +AKAE+ FK+PE  +TL+LQDVQ LV WVLAEGFMP WVFIKNKPLIPKVV++YLPGLDAALY+S SK L + K  
Subjt:  DEG--KSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKF

Query:  CGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQPGFIQTLPAPE
        CG+P A+LALSC+ D M+TID +LTCK ++K+          L S PE   L  ++   ++L K++PFPV+YYTL+ K +E NGY F +     TLPAP 
Subjt:  CGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQPGFIQTLPAPE

Query:  GCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        G  P E++ALDCEMC+T EG ELTR+TLVD++G+VLLDKLV P+N I DYNTR
Subjt:  GCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR

Arabidopsis top hitse value%identityAlignment
AT3G50090.1 Exonuclease family protein2.0e-0650Show/hide
Query:  PNEMLALDCEMCVTCEGFE-LTRITLVDMEGRVLLDKLVKPSNAIVDYNT
        PN+MLALDCEM +  +G E + R+  VD   +V+LD+ VKP   +VDY T
Subjt:  PNEMLALDCEMCVTCEGFE-LTRITLVDMEGRVLLDKLVKPSNAIVDYNT

AT3G50100.1 small RNA degrading nuclease 14.9e-0546.81Show/hide
Query:  MLALDCEMCVTCEGFE-LTRITLVDMEGRVLLDKLVKPSNAIVDYNT
        M+A+DCEM +  +G E L R+ +VD + +V+LD+ VKP+  +VDY T
Subjt:  MLALDCEMCVTCEGFE-LTRITLVDMEGRVLLDKLVKPSNAIVDYNT

AT5G05540.1 small RNA degrading nuclease 21.3e-0528.07Show/hide
Query:  TFKKFCGSPRAVLALSCISD----RMQTIDALLTCKVKRKRD----ANKVDLKNKLTSEPEISGLEKEAP---ISIKLPKELPFPVTYYTLTAKALEDNG
        T+K+F       L  S +SD    R   + A LT  +K+K D    A  + L N +  + +   L++ A    + + L  +  +P+ Y            
Subjt:  TFKKFCGSPRAVLALSCISD----RMQTIDALLTCKVKRKRD----ANKVDLKNKLTSEPEISGLEKEAP---ISIKLPKELPFPVTYYTLTAKALEDNG

Query:  YPFNQPGFIQTLPAPEGCSPN--EMLALDCEMCVTCEGFE-LTRITLVDMEGRVLLDKLVKPSNAIVDYNT
        +P N   +++T    +   P   EM+A+DCEM +  +G E + R+  VD + +V+LD+ VKP+  +VDY T
Subjt:  YPFNQPGFIQTLPAPEGCSPN--EMLALDCEMCVTCEGFE-LTRITLVDMEGRVLLDKLVKPSNAIVDYNT

AT5G05540.2 small RNA degrading nuclease 21.3e-0528.07Show/hide
Query:  TFKKFCGSPRAVLALSCISD----RMQTIDALLTCKVKRKRD----ANKVDLKNKLTSEPEISGLEKEAP---ISIKLPKELPFPVTYYTLTAKALEDNG
        T+K+F       L  S +SD    R   + A LT  +K+K D    A  + L N +  + +   L++ A    + + L  +  +P+ Y            
Subjt:  TFKKFCGSPRAVLALSCISD----RMQTIDALLTCKVKRKRD----ANKVDLKNKLTSEPEISGLEKEAP---ISIKLPKELPFPVTYYTLTAKALEDNG

Query:  YPFNQPGFIQTLPAPEGCSPN--EMLALDCEMCVTCEGFE-LTRITLVDMEGRVLLDKLVKPSNAIVDYNT
        +P N   +++T    +   P   EM+A+DCEM +  +G E + R+  VD + +V+LD+ VKP+  +VDY T
Subjt:  YPFNQPGFIQTLPAPEGCSPN--EMLALDCEMCVTCEGFE-LTRITLVDMEGRVLLDKLVKPSNAIVDYNT

AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.9e-7859.29Show/hide
Query:  DEG--KSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKF
        D+G  KSN G      SFFDIYG +AKAE+ FK+PE  +TL+LQDVQ LV WVLAEGFMP WVFIKNKPLIPKVV++YLPGLDAALY+S SK L + K  
Subjt:  DEG--KSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKF

Query:  CGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQPGFIQTLPAPE
        CG+P A+LALSC+ D M+TID +LTCK ++K+          L S PE   L  ++   ++L K++PFPV+YYTL+ K +E NGY F +     TLPAP 
Subjt:  CGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQPGFIQTLPAPE

Query:  GCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR
        G  P E++ALDCEMC+T EG ELTR+TLVD++G+VLLDKLV P+N I DYNTR
Subjt:  GCSPNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTTCAAGTGTTTCAGGTTTGGATTCCGAAGACGAGGGCAAGTCGAACGTGGGTAAAACGCAGGAGAAGCCCAGCTTCTTCGATATATATGGAGCCGATGCCAA
AGCTGAGATTCTTTTCAAAACTCCGGAATCTAATTCAACTTTAAGTCTGCAAGATGTTCAAGAACTTGTAAATTGGGTGCTTGCTGAAGGTTTCATGCCGCGTTGGGTTT
TTATCAAGAATAAACCCCTAATCCCAAAAGTGGTTATGGTTTATCTCCCTGGCCTGGATGCTGCTCTATACATGTCACAGTCCAAGATACTTCCTACATTTAAAAAATTC
TGCGGCAGTCCAAGGGCAGTTTTAGCTCTTAGCTGTATATCAGATAGAATGCAAACAATTGATGCACTTTTGACGTGTAAGGTAAAGAGAAAGAGGGATGCGAACAAAGT
AGACCTAAAGAATAAATTGACTTCTGAGCCAGAAATATCTGGCCTTGAAAAAGAAGCACCAATATCTATCAAGCTCCCAAAGGAGTTACCTTTCCCTGTAACATATTATA
CGCTAACTGCCAAAGCACTGGAAGACAATGGTTATCCTTTCAATCAACCAGGTTTTATCCAAACACTTCCGGCTCCTGAGGGATGTTCACCTAATGAAATGTTGGCACTT
GACTGTGAGATGTGTGTGACCTGTGAAGGGTTTGAGCTCACAAGAATAACCCTGGTGGATATGGAAGGACGGGTTCTTCTTGACAAATTGGTAAAACCATCAAATGCAAT
TGTTGATTACAATACGAGGCAAGATCTTCTTGAGCTTTTAGTAGACAGTTAG
mRNA sequenceShow/hide mRNA sequence
CAATATTTTCTCTCCTTAAGGGAAAGGTAACGAATGGGTTTTGATTCACAATCTTCCATAGGCGTTGGGCTTTCGAGTTGAAGAGAGCAAAAAACTTGTTTGGCTTCTTT
CTTCACTCTCTGCTCGGAAAATTCACTATGCCATCTTCAAGTGTTTCAGGTTTGGATTCCGAAGACGAGGGCAAGTCGAACGTGGGTAAAACGCAGGAGAAGCCCAGCTT
CTTCGATATATATGGAGCCGATGCCAAAGCTGAGATTCTTTTCAAAACTCCGGAATCTAATTCAACTTTAAGTCTGCAAGATGTTCAAGAACTTGTAAATTGGGTGCTTG
CTGAAGGTTTCATGCCGCGTTGGGTTTTTATCAAGAATAAACCCCTAATCCCAAAAGTGGTTATGGTTTATCTCCCTGGCCTGGATGCTGCTCTATACATGTCACAGTCC
AAGATACTTCCTACATTTAAAAAATTCTGCGGCAGTCCAAGGGCAGTTTTAGCTCTTAGCTGTATATCAGATAGAATGCAAACAATTGATGCACTTTTGACGTGTAAGGT
AAAGAGAAAGAGGGATGCGAACAAAGTAGACCTAAAGAATAAATTGACTTCTGAGCCAGAAATATCTGGCCTTGAAAAAGAAGCACCAATATCTATCAAGCTCCCAAAGG
AGTTACCTTTCCCTGTAACATATTATACGCTAACTGCCAAAGCACTGGAAGACAATGGTTATCCTTTCAATCAACCAGGTTTTATCCAAACACTTCCGGCTCCTGAGGGA
TGTTCACCTAATGAAATGTTGGCACTTGACTGTGAGATGTGTGTGACCTGTGAAGGGTTTGAGCTCACAAGAATAACCCTGGTGGATATGGAAGGACGGGTTCTTCTTGA
CAAATTGGTAAAACCATCAAATGCAATTGTTGATTACAATACGAGGCAAGATCTTCTTGAGCTTTTAGTAGACAGTTAG
Protein sequenceShow/hide protein sequence
MPSSSVSGLDSEDEGKSNVGKTQEKPSFFDIYGADAKAEILFKTPESNSTLSLQDVQELVNWVLAEGFMPRWVFIKNKPLIPKVVMVYLPGLDAALYMSQSKILPTFKKF
CGSPRAVLALSCISDRMQTIDALLTCKVKRKRDANKVDLKNKLTSEPEISGLEKEAPISIKLPKELPFPVTYYTLTAKALEDNGYPFNQPGFIQTLPAPEGCSPNEMLAL
DCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTRQDLLELLVDS