; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G20580 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G20580
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionribosome maturation protein SBDS
Genome locationChr6:18675084..18677945
RNA-Seq ExpressionCSPI06G20580
SyntenyCSPI06G20580
Gene Ontology termsGO:0042256 - mature ribosome assembly (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002140 - Ribosome maturation protein Sdo1/SBDS
IPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013087 - Zinc finger C2H2-type
IPR018023 - Ribosome maturation protein SBDS, conserved site
IPR018978 - Ribosome maturation protein Sdo1/SBDS, C-terminal
IPR019783 - Ribosome maturation protein Sdo1/SBDS, N-terminal
IPR036236 - Zinc finger C2H2 superfamily
IPR036786 - Ribosome maturation protein SBDS, N-terminal domain superfamily
IPR037188 - Ribosome maturation protein Sdo1/SBDS, central domain superfamily
IPR039100 - Ribosome maturation protein Sdo1/SBDS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146781.1 ribosome maturation protein SBDS [Cucumis sativus]1.5e-20299.72Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
        SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC

Query:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        STCNVAVGD TKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

XP_008466694.1 PREDICTED: ribosome maturation protein SBDS [Cucumis melo]5.7e-19796.94Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYSNVSKGVLAKTK+LKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
        S+DQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVEL PRQLKET+S IPQLSEALQKQTIS+NSDNAPKEGKRC
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC

Query:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        STCNVAVGDATKFREH+KS+WHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

XP_022936066.1 ribosome maturation protein SBDS [Cucurbita moschata]1.6e-18389.44Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYSNVSKGVLAKTK+LKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY VPEQN PSLLDKLN+WSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKR
        S+DQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY +DD+ENVELPPR +KE++S IPQLSEALQKQ IS++  N  KEGKR
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKR

Query:  CSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        CSTCNV VGDA +FREH+KSEWHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLKEYSF
Subjt:  CSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

XP_023535044.1 ribosome maturation protein SBDS [Cucurbita pepo subsp. pepo]2.7e-18389.72Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYSNVSKGVLAKTK+LKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY VPEQN PSLLDKLNAWSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKR
        S+D SGNQQRSIICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY +DD+ENVELPPR +KE++S IPQLSEALQKQ IS++  N  KEGKR
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKR

Query:  CSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        CSTCNV VGDA +FREH+KSEWHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLKEYSF
Subjt:  CSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

XP_038886377.1 ribosome maturation protein SBDS [Benincasa hispida]1.2e-19193.31Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYSNVSKGVLAKTK+LKAAF TDDQTEICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RYIVPEQN PSLLDKLNAWSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
        S+DQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSFCLHEEGDTNVDQY+DDYENVELPPRQ+KE++S IPQL+EALQKQTIS+NS+NA KEGKRC
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC

Query:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        STCNV VGDAT+FREH+KSEWHKHNVKRKTKNLPPLTEEECTVELAMGD+ESDLKEYSF
Subjt:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

TrEMBL top hitse value%identityAlignment
A0A0A0KIY6 C2H2-type domain-containing protein7.5e-20399.72Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
        SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC

Query:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        STCNVAVGD TKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

A0A1S3CRW0 ribosome maturation protein SBDS2.8e-19796.94Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYSNVSKGVLAKTK+LKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
        S+DQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVEL PRQLKET+S IPQLSEALQKQTIS+NSDNAPKEGKRC
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC

Query:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        STCNVAVGDATKFREH+KS+WHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

A0A5A7UXA4 Ribosome maturation protein SBDS2.8e-19796.94Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYSNVSKGVLAKTK+LKAAFGTDDQTEICLKILKEGELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
        S+DQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVEL PRQLKET+S IPQLSEALQKQTIS+NSDNAPKEGKRC
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC

Query:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        STCNVAVGDATKFREH+KS+WHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
Subjt:  STCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

A0A6J1F6G6 ribosome maturation protein SBDS7.8e-18489.44Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYSNVSKGVLAKTK+LKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY VPEQN PSLLDKLN+WSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKR
        S+DQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY +DD+ENVELPPR +KE++S IPQLSEALQKQ IS++  N  KEGKR
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKR

Query:  CSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        CSTCNV VGDA +FREH+KSEWHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLKEYSF
Subjt:  CSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

A0A6J1IK36 ribosome maturation protein SBDS2.3e-18388.89Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYSNVSKGVLAKTK+LKAAF TDDQ EICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY VPEQN PSLLDKLN+WSASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKR
        S+DQSGNQQRS+ICELDPSFYRDCNPLMSEL G+FEVLSFCLHEEGDTNVDQY +DD+ENVELPPR +KE++S IPQLSEALQKQ IS++  N  KEGKR
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQY-EDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKR

Query:  CSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
        CSTCNV VGDA +FREH+KSEWHKHN+KRKTKNLPPLTEEEC VE+A+GDSESDLKEYSF
Subjt:  CSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

SwissProt top hitse value%identityAlignment
P70122 Ribosome maturation protein SBDS2.0e-6755.47Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVSKG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD
         QL   FRDIATIV  K  NPETKRPYT+ +IER M+DIH++V PN S+K+QALEVI +L++   I+R+ MRLR+I+P      L +KL      + S+D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
         S  QQ  I+C +DP  +R+ + L+   ++  G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Q3SWZ6 Ribosome maturation protein SBDS7.5e-6755.47Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVSKG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD
         QL   FRDIATIV  K  NPETKRPYT+ +IER M+DIH++V PN S+K+QALEVI +L++   I+R+ MRLR+I+P      L +KL      I S+D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
            QQ  I+C +DP  +R+ + L+   ++  G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Q5RAZ2 Ribosome maturation protein SBDS1.4e-6554.66Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVSKG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD
         QL   FRDIATIV  K  NPETKRPYT+ +IER M+DIH++V  N S+K+QALEVI +L++   I+R+ MRLR+I+P      L +KL      I S+D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
            QQ  I+C +DP  +R+ + L+   ++  G  EVL+    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Q5RK30 Ribosome maturation protein SBDS4.4e-6755.06Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVSKG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD
         QL   FRDIATIV  K  NPETKRPYT+ +IER M+DIH++V PN S+K+QALEVI +L++   I+R+ MRLR+++P      L +KL      + S+D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
         S  QQ  I+C +DP  +R+ + L+   ++  G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Q9Y3A5 Ribosome maturation protein SBDS1.4e-6554.66Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE
        S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVSKG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD
         QL   FRDIATIV  K  NPETKRPYT+ +IER M+DIH++V  N S+K+QALEVI +L++   I+R+ MRLR+I+P      L +KL      I S+D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDD

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD
            QQ  I+C +DP  +R+ + L+   ++  G  EVL+    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSFCLHEEGD

Arabidopsis top hitse value%identityAlignment
AT1G43860.1 sequence-specific DNA binding transcription factors4.1e-12961.29Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK
        MS++LVQP+GQKRLTNVAVVRLKK G RFEIACYKNKVLSWRSGVE+D+DEVLQS  VYSNVSKGVLAK+K+L  +FG+DD T+IC+ IL++GELQVAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV
        ERE+Q S+QFRDIATIVMQKT NPET+RPYTISM+ERLM +IHFAVDP+ +SKKQAL+VI ELQKHFPIKRSPMRLR  VP QN PSLL+KL  W  S+V
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIV

Query:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPR--------QLKETKSVIPQLSEALQKQTISINSD-
        S D+SG Q  S +CE++P  +R+C+  +  + GR E+L+  +H EGDT++D Y D+++++ L           + K+    + +LS+ LQKQ IS   + 
Subjt:  SDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPR--------QLKETKSVIPQLSEALQKQTISINSD-

Query:  ----NAPKEGKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
               K+G +CSTCN  VG+A ++REH KS+WHKHN+KRKT+ LPP++ +EC  E+ M DS +DLK+YSF
Subjt:  ----NAPKEGKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF

AT2G24500.1 Zinc finger protein 6226.4e-0545.24Show/hide
Query:  GKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTE
        G  C++CN    D  + + HYKSEWH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTE

AT4G31420.1 Zinc finger protein 6228.4e-0542.86Show/hide
Query:  GKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTE
        G  C+ CN+   D  +   HYKS+WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTE

AT4G31420.2 Zinc finger protein 6228.4e-0542.86Show/hide
Query:  GKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTE
        G  C+ CN+   D  +   HYKS+WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKTKNLPPLTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAA
GGTCCTTTCATGGCGCTCTGGCGTGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAAGAATTGA
AAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTT
CGTGATATTGCAACTATTGTTATGCAGAAAACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTAATGCGTGACATTCATTTTGCTGTTGA
TCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTTCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACAGA
ACGTTCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATTGTTTCCGATGACCAGTCAGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTT
TATCGAGACTGCAATCCATTAATGAGTGAACTACATGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATATGAGGACGATTA
TGAGAATGTGGAACTGCCACCAAGGCAATTAAAGGAAACGAAATCGGTTATTCCTCAACTAAGTGAAGCTTTACAAAAGCAGACAATTTCTATCAACAGTGATAATGCCC
CAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGCTGTGGGGGATGCTACAAAGTTTAGAGAGCATTACAAGAGTGAGTGGCATAAGCATAATGTAAAGCGCAAAACC
AAGAATCTTCCACCTCTGACCGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGATTCAGAGTCTGACCTGAAGGAGTATTCATTTTGA
mRNA sequenceShow/hide mRNA sequence
CGAGAGGCAAACATGCAAGTAAAGCCCATTAAGCATATATAAACGAAGTGGAGGGACAGACCTTCGTTGTAGTATCAGTATTGTTATCGTTTCCCTTTTTAATCGAATCG
CCAAACTTTAACGAAGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTG
CCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCA
AAAACAAAAGAATTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCA
ATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAAACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTAATGCGTGACA
TTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTTCCAATTAAACGGTCACCTATGAGGTTACGATAT
ATCGTACCTGAACAGAACGTTCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATTGTTTCCGATGACCAGTCAGGAAATCAGCAACGAAGCATTATTTGTGA
ATTGGATCCTAGCTTTTATCGAGACTGCAATCCATTAATGAGTGAACTACATGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATC
AATATGAGGACGATTATGAGAATGTGGAACTGCCACCAAGGCAATTAAAGGAAACGAAATCGGTTATTCCTCAACTAAGTGAAGCTTTACAAAAGCAGACAATTTCTATC
AACAGTGATAATGCCCCAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGCTGTGGGGGATGCTACAAAGTTTAGAGAGCATTACAAGAGTGAGTGGCATAAGCATAA
TGTAAAGCGCAAAACCAAGAATCTTCCACCTCTGACCGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGATTCAGAGTCTGACCTGAAGGAGTATTCATTTTGAACTA
CCTGCCATGTTATGCTTCGGAGAATAGCTGTGAGGTTTTTGTACTTTAGTTACTATCATTGGCTAGTTGTAGCTTAAACTCTGTTTGATGGTCTTGACATGTCACGCATC
GTGATCGTGTAACGAATTCAGTTTTCATAGTTTTGACATTTTAGTGCTTTTGTTTTTGTACTATAAAGAATGTAATGAAACTATGGCAGCGTTGTAAATCAATTTGGTTT
TTCTTTCTTAATGTTTTTAAGTGTTCGCAAGTGGAAAAAAACTCACTTGGCTTGATTTGAAACAGAACAATTACTAATCGTTTCCTTTCTTT
Protein sequenceShow/hide protein sequence
MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQF
RDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSF
YRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRCSTCNVAVGDATKFREHYKSEWHKHNVKRKT
KNLPPLTEEECTVELAMGDSESDLKEYSF