CuGenDBv2

Gene ID	CSPI06G21120
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	zinc finger HIT domain-containing protein 3
Genome location	Chr6:19148311..19152871
RNA-Seq Expression	CSPI06G21120
Synteny	CSPI06G21120
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000492 - box C/D snoRNP assembly (biological process) GO:0048254 - snoRNA localization (biological process) GO:0005634 - nucleus (cellular component) GO:0070761 - pre-snoRNP complex (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007529 - Zinc finger, HIT-type IPR040197 - Zinc finger HIT domain-containing protein 3

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]

3.7e-69

100

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]

2.4e-63

93.98

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        MAPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTA NG+FVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKL+KFILA
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        IDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]

6.2e-56

85.71

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTA NG+ VDRPICV DQ+EVLEKSQLEAIASSSEI N LNDE LQK I A
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        I SSPDPETE+D+AMEDEAFRIFSSKISSII S
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

XP_031743372.1 zinc finger HIT domain-containing protein 3 isoform X2 [Cucumis sativus]

2.8e-56

100

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPET
        IDSSPDPET
Subjt:  IDSSPDPET

XP_038886971.1 zinc finger HIT domain-containing protein 3 [Benincasa hispida]

3.1e-55

83.46

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCAI+PVS GDQ TA NG+ VDRPI V DQNE+LEK QLEAIASSSEIH+ LN E+LQK ILA
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        IDSSPDPETE+DKAMEDEAF IFS+KISSII S
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDK5 HIT-type domain-containing protein

1.8e-69

100

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X1

1.1e-63

93.98

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        MAPR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSE DQSTA NG+FVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKL+KFILA
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        IDSS DPETE+DKAMEDEAFRIFSSKISSII+S
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X1

3.0e-56

85.71

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KPVS GDQSTA NG+ VDRPICV DQ+EVLEKSQLEAIASSSEI N LNDE LQK I A
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        I SSPDPETE+D+AMEDEAFRIFSSKISSII S
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

A0A6J1ESW0 zinc finger HIT domain-containing protein 3

5.9e-52

80.45

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS A NG+ VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDEKL+  I A
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        IDSSPDPE E+DKAMEDEAFRI S KISSI+ S
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

A0A6J1JZX2 zinc finger HIT domain-containing protein 3

9.0e-53

81.95

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Query:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS A NG+ VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDEKL+  I A
Subjt:  MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILA

Query:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS
        IDSSPDPE E+DKAMEDEAFRI SSKISSII S
Subjt:  IDSSPDPETEVDKAMEDEAFRIFSSKISSIINS

SwissProt top hits

e value

%identity

Alignment

O36031 Uncharacterized zinc-finger protein C4F10.19c

1.2e-04

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Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHK
        C +CNE+  KYKCP C  PYCSL C+K H+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHK

Q15649 Zinc finger HIT domain-containing protein 3

3.6e-06

25.17

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Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE----------------VPC-AIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNI
        C +C E P KY+CP C  PYCS+VCF+KHKE                +P   +KPV   D   +    F++      ++ + +    L+ +  S+ + ++
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE----------------VPC-AIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNI

Query:  LNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSII
        L +  L++ ++ +D   D    +   M++  F  F+     I+
Subjt:  LNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSII

Q2KIH1 Zinc finger HIT domain-containing protein 3

1.4e-05

58.97

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Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPV
        C VC E P KY+CP C  PYCSL CF+KHK  P    PV
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPV

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)

3.0e-05

24.48

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Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE----------------VPC-AIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNI
        C +C E P KY+CP C  PYCS+ CF+KHKE                +P    KPV   D   +    F++      ++ + +    L+ +  S+ + ++
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKE----------------VPC-AIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNI

Query:  LNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSII
        L +  L++ ++ +D   D    +   M++  F  F+     I+
Subjt:  LNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSII

Q9CQK1 Zinc finger HIT domain-containing protein 3

1.8e-05

24.26

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Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIK----------PVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQ
        C VC E P KY+CP C  PYCS+ CF+KHKE  C+ +          P    ++S   + +  D  +   ++ + +    L+ +  S  + ++L +  L+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIK----------PVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQ

Query:  KFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSII
        + ++++D   +    +   M++  F  F+     I+
Subjt:  KFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSII

Arabidopsis top hits

e value

%identity

Alignment

AT4G28820.1 HIT-type Zinc finger family protein

2.5e-26

45.12

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Query:  APRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKP----------------------------VSEGDQSTACNGT-----FVDRPICVGDQN
        A + C++C +  SKYKCP CL PYCSL CFK HKE PCA KP                            V E  Q  A   +      V RPI V ++ 
Subjt:  APRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKP----------------------------VSEGDQSTACNGT-----FVDRPICVGDQN

Query:  EVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN
         +LEK+Q EAIASSSEI   L DE LQK I +IDSS +P  E+D+AM  EAFR F+ KI S I+
Subjt:  EVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN

AT4G28820.2 HIT-type Zinc finger family protein

1.1e-26

43.83

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Query:  APRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCA---------IKPVS----------------------EGDQSTACNGTFVDRPICVGDQNEV
        A + C++C +  SKYKCP CL PYCSL CFK HKE PCA          KP S                      +   ++      V RPI V ++  +
Subjt:  APRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCA---------IKPVS----------------------EGDQSTACNGTFVDRPICVGDQNEV

Query:  LEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN
        LEK+Q EAIASSSEI   L DE LQK I +IDSS +P  E+D+AM  EAFR F+ KI S I+
Subjt:  LEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETEVDKAMEDEAFRIFSSKISSIIN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTCCTCGGAAATGTCAGGTTTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTACTGCTCTCTGGTATGTTTTAAGAAACACAAAGAAGT
GCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAGTCAACTGCTTGCAACGGAACATTTGTGGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGT
CGCAGCTAGAGGCTATTGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGAAGTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACGGAA
GTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAACTCTTAG

mRNA sequence

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CAAACTTGCATTCCGTTCTCTCTCCATAATTTTACCCCCAAATTTCCTTTCCAACTATTTTTCGTTTGTTCTTCCCTTCCCCACAAAGACTGCCGTAGCTCCCACAGGTG
AACTTCTCCATCTCTCTCTCTCTTTAAGTGCGAGATTCCCTCAGCCGCCCTTCACCTTCAATCTCTGAACTTGATCGCCGACGCAGCCCAGTCCTGACTGCCGCGCCCAC
GTCCTAAAACGTTTTTTTGACGAGCAGCTTAGAGTTCGAATGTGCTTAGCACTCTGTCCAGCAAGATTAAGGACGTTGCCCGGGCATTCGTGTCAGTTTGGAATCCATTC
AAACACGAACCAACAGCGTTTGGTATTAAGAAATTCATCATTCTATGGCTCCTCGGAAATGTCAGGTTTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTT
GCACCTTACTGCTCTCTGGTATGTTTTAAGAAACACAAAGAAGTGCCCTGTGCCATCAAGCCTGTGTCTGAAGGGGACCAGTCAACTGCTTGCAACGGAACATTTGTGGA
TAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCCTCAGAAATACACAATATTTTGAATGATGAGAAACTCCAGA
AGTTTATCCTTGCCATTGATAGCTCACCAGATCCAGAAACGGAAGTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGTAGCAAGATATCATCCATCATCAAC
TCTTAGACCTAACAGTCATAGATGGAGGAGGGAAAGACATGTATATGTATAAACAACTAGACGTTTCTGCCCCCTTGGCATAATGGATCAACTTAGCAGATGATGATTTC
AGCAAAGAACGACGCTTCTTGGTTTGTAGTAATGCTGGGAGACCATCTAAGTTCTCAGCTGCTATGTTTAATGGTGATCAATGTACCAAATTATACTGATCAGTTTTCAA
GTACTATAGGAACATCTCCTTTTGACGATCACCCAAACTCGTATTTGATGATTTCTTGGCTGAATAGGATGTTGCAAGCCATGTTTTGACTAAAAGACTTGCCAATGAAT
TAACCAACTGAAAGTTGAAGGTTTTACGATTTTATATCATAAAATTTGCATAGGTTTTAGCACGATAA

Protein sequence

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MAPRKCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCAIKPVSEGDQSTACNGTFVDRPICVGDQNEVLEKSQLEAIASSSEIHNILNDEKLQKFILAIDSSPDPETE
VDKAMEDEAFRIFSSKISSIINS

CSPI06G21120 (gene) of Cucumber (PI 183967) v1 genome