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CSPI06G21200 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G21200
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranscription factor PRE6-like
Genome locationChr6:19218619..19219917
RNA-Seq ExpressionCSPI06G21200
SyntenyCSPI06G21200
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]5.3e-41100Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]8.5e-3994.79Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]4.5e-3287.5Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]1.0e-3186.46Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRN++ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]3.0e-3691.67Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNS+ A PLISDDQI+DLVSKLQRLIPELRNPRASHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLA+TENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein2.6e-41100Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

A0A1S3CPL2 transcription factor PRE6-like4.1e-3994.79Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

A0A5D3BPI2 Transcription factor PRE6-like4.1e-3994.79Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

A0A6J1G4C0 transcription factor PRE6-like2.2e-3287.5Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

A0A6J1KGK3 transcription factor PRE6-like2.2e-3287.5Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

SwissProt top hitse value%identityAlignment
F4JCN9 Transcription factor PRE49.8e-2265.96Show/hide
Query:  SRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        S R SRSR + A+  +I+D+QI DLV +L RL+PEL N R S K SASRVLQETC+YIRNL +EVDDLSERLSQLL +T  DSA+A +IRSL M
Subjt:  SRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

Q8GW32 Transcription factor PRE67.0e-2877.66Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSL
        MSSRRSSRSR S   S  ISDDQI+DLVSKLQ LIPELR  R S K SAS+VLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEA IIRSL
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSL

Q9CA64 Transcription factor PRE36.8e-2368.09Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSL
        MS RR SRSR S+  S  IS+DQI DL+ KLQ+L+PELR+ R S K SA+RVLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+A +IRSL
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSL

Q9FLE9 Transcription factor PRE12.3e-2362.5Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MS+RRS +S    +++P ISD+Q+ DLVSKL++++PE+   R S KASAS+VLQETCNYIRNL+REVD+LSERLSQLL + + DS EA +IRSL M
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

Q9LJX1 Transcription factor PRE52.0e-2260.42Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MS+RRS ++ N++     ISDDQ+ DLVSKL++ +PE+   R S K SAS+VLQETCNYIR LHREVD+LS+RLSQLL + + DS EA +IRSL M
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein5.0e-2977.66Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSL
        MSSRRSSRSR S   S  ISDDQI+DLVSKLQ LIPELR  R S K SAS+VLQETCNYIRNLHREVDDLS+RLS+LLA+T+++SAEA IIRSL
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.8e-2468.09Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSL
        MS RR SRSR S+  S  IS+DQI DL+ KLQ+L+PELR+ R S K SA+RVLQ+TCNYIRNLHREVDDLSERLS+LLA   +D+A+A +IRSL
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-2360.42Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MS+RRS ++ N++     ISDDQ+ DLVSKL++ +PE+   R S K SAS+VLQETCNYIR LHREVD+LS+RLSQLL + + DS EA +IRSL M
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

AT3G47710.1 BANQUO 37.0e-2365.96Show/hide
Query:  SRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        S R SRSR + A+  +I+D+QI DLV +L RL+PEL N R S K SASRVLQETC+YIRNL +EVDDLSERLSQLL +T  DSA+A +IRSL M
Subjt:  SRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.7e-2462.5Show/hide
Query:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
        MS+RRS +S    +++P ISD+Q+ DLVSKL++++PE+   R S KASAS+VLQETCNYIRNL+REVD+LSERLSQLL + + DS EA +IRSL M
Subjt:  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGA
GCTTCGTAATCCCCGTGCCTCCCACAAGGCGTCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGAT
TGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAA
mRNA sequenceShow/hide mRNA sequence
CATTATTTCTCTCTCTCTCTTCATATTTCTCTCTATATATACATCTCTATCCCATATCTCTCTCCCTTCATCCCCATAACGTCGTCCTTTAACCTTCTCTCTCCCTAAAT
ACTTCTCTTTAGCTTCATCACACAACAATTTTATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCT
GATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGCGTCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAA
CTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAAAAAA
CCATTTAAATAACCACAATTTCCCTACCCCATAATTAATAATTACGACGTCCTTAATTTCTTATTTCTCATTTTCCTCTATATATATTATATATGATATTTAAATTATAT
TGTTTAGCTAGGGCTCCTTTTGGCCAATGTATTAGACCACTACACAGAAG
Protein sequenceShow/hide protein sequence
MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM