CuGenDBv2

Gene ID	CSPI06G21420
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Chr6:19364847..19365426
RNA-Seq Expression	CSPI06G21420
Synteny	CSPI06G21420
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

RVW17511.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.6e-35

59.35

Show/hide

Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

RVW26456.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.6e-35

59.35

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Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

RVW94544.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.6e-35

59.35

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Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

RVW99682.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.6e-35

59.35

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Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

RVX16158.1 Copia protein [Vitis vinifera]

1.6e-35

59.35

Show/hide

Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

TrEMBL top hits

e value

%identity

Alignment

A0A438C2Q1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.7e-36

59.35

Show/hide

Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

A0A438ETG9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.7e-36

59.35

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Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

A0A438HZK0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.7e-36

59.35

Show/hide

Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

A0A438ID00 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.7e-36

59.35

Show/hide

Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

A0A438ISJ0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.7e-36

59.35

Show/hide

Query:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
        AP + ++P ++   SV   + G++W+R ++V+++IFA+ VA +II  +ED EP++VEECR+R DWPKWKE IQAELNS +K EVFGPVV  P+ VKPVG+
Subjt:  APSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF

Query:  EWVFVPKRNENNEVTRYKARLVA
        +WVFV KRNENNE+ RYKARLVA
Subjt:  EWVFVPKRNENNEVTRYKARLVA

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.0e-05

33.33

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Query:  NEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGFEWVFVPKRNENNEVTRYKARLV
        ++D EP+S++E  +  +  +  + +Q E+ S  K   +  +V +PKG +P+  +WVF  K++ + ++ RYKARLV
Subjt:  NEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGFEWVFVPKRNENNEVTRYKARLV

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

2.6e-04

21.92

Show/hide

Query:  IPAANAPSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENED------------------SEPKSVEECRNRKDWPKWKEVIQAELN
        +P+AN  + +  P  H +          R  R    + D + ++VA   IH+                     ++ K        K++  W   +  E+ 
Subjt:  IPAANAPSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENED------------------SEPKSVEECRNRKDWPKWKEVIQAELN

Query:  SFSKLEVFGPVVHIPKGVKPVGFEWVFVPKRNENNEVTRYKARLVA
        +      +  +  +P   KP+G +WV+  K N +  + RYKARLVA
Subjt:  SFSKLEVFGPVVHIPKGVKPVGFEWVFVPKRNENNEVTRYKARLVA

Sequences

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CDS sequence

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ATGATCAAGTCATATATTCCAGCGGCAAATGCTCCATCTAAAATTGAAATCCCAATTCAGCACGTTGCTGAATCTGTGTTGCGGCAAAAGCATGGAAAAAGATGGAATAG
AACTGATGTAGTTGTGGACGACATTTTTGCATATAATGTTGCACATAATATCATTCATGAAAATGAAGATTCTGAACCTAAATCTGTTGAAGAATGTCGTAATAGAAAGG
ATTGGCCCAAGTGGAAAGAAGTCATCCAAGCAGAATTGAACTCATTTTCAAAACTTGAAGTTTTTGGACCTGTAGTTCATATACCTAAAGGGGTAAAACCTGTGGGATTT
GAATGGGTATTTGTGCCTAAAAGAAATGAAAATAATGAGGTCACTAGATATAAAGCACGGCTTGTTGCATAA

mRNA sequence

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Protein sequence

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MIKSYIPAANAPSKIEIPIQHVAESVLRQKHGKRWNRTDVVVDDIFAYNVAHNIIHENEDSEPKSVEECRNRKDWPKWKEVIQAELNSFSKLEVFGPVVHIPKGVKPVGF
EWVFVPKRNENNEVTRYKARLVA

CSPI06G21420 (gene) of Cucumber (PI 183967) v1 genome