; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G21680 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G21680
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionIntegrase, catalytic core
Genome locationChr6:19622457..19622726
RNA-Seq ExpressionCSPI06G21680
SyntenyCSPI06G21680
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0005506 - iron ion binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037684.1 Integrase, catalytic core [Cucumis melo var. makuwa]5.3e-2770.45Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD
        MI P  N N VEL+NV YVP +KKNLV++SQLTS+GNF VF P+DVKVYHN KVS T L+EG+RMDFIY M  E AYVNKT+KNET D
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD

KAA0037956.1 glutamate receptor 2.8-like [Cucumis melo var. makuwa]8.5e-2569.32Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD
        MI P  NSN VEL+NV YVPR+KKNLV VSQLT IGNF VF  DDVKVYHNLKVS T L+EG+R++ IY + VE AY+NKT+KN+T D
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD

KAA0046986.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.5e-2672.73Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD
        MI P  NSN VEL+NV YV  +KKNLVSVSQLTS GNF VF PDDVKVYHNLKVS T L+EG+RMD IY M  E AYVNKT+KN+T D
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD

KAE8647312.1 hypothetical protein Csa_004446 [Cucumis sativus]1.7e-4198.88Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTDF
        MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNF VFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTDF
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTDF

TYK27792.1 Integrase, catalytic core [Cucumis melo var. makuwa]5.0e-2570.45Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD
        MI P  NSN VEL++V YVP +KKNL+SVSQLTS  NF VF PDDVKVYHNLKVS T L+EG+R+  IY M VE+AYV KTQKNET D
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD

TrEMBL top hitse value%identityAlignment
A0A0A0KHJ1 Uncharacterized protein8.2e-4298.88Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTDF
        MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNF VFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTDF
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTDF

A0A5A7T2J1 Integrase, catalytic core2.6e-2770.45Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD
        MI P  N N VEL+NV YVP +KKNLV++SQLTS+GNF VF P+DVKVYHN KVS T L+EG+RMDFIY M  E AYVNKT+KNET D
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD

A0A5A7T6Z1 Glutamate receptor 2.8-like4.1e-2569.32Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD
        MI P  NSN VEL+NV YVPR+KKNLV VSQLT IGNF VF  DDVKVYHNLKVS T L+EG+R++ IY + VE AY+NKT+KN+T D
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD

A0A5A7TYD2 Integrase, catalytic core7.5e-2772.73Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD
        MI P  NSN VEL+NV YV  +KKNLVSVSQLTS GNF VF PDDVKVYHNLKVS T L+EG+RMD IY M  E AYVNKT+KN+T D
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD

A0A5D3DWA1 Integrase, catalytic core2.4e-2570.45Show/hide
Query:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD
        MI P  NSN VEL++V YVP +KKNL+SVSQLTS  NF VF PDDVKVYHNLKVS T L+EG+R+  IY M VE+AYV KTQKNET D
Subjt:  MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAA
CTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAG
AGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCACACCTCACCCCAATTCGAATCACGTGGAACTGGAGAACGTATCCTATGTGCCTAGAGTGAAGAAGAATTTGGTGTCAGTATCTCAATTGACATCTATAGGCAA
CTTTTTTGTGTTCAGACCTGATGATGTCAAGGTCTACCATAATCTTAAAGTTAGTGATACATCGTTGTTGGAAGGACAAAGGATGGACTTCATTTATGCTATGTTAGTAG
AGGTTGCCTACGTGAACAAGACGCAGAAGAATGAAACAACAGATTTCTAG
Protein sequenceShow/hide protein sequence
MITPHPNSNHVELENVSYVPRVKKNLVSVSQLTSIGNFFVFRPDDVKVYHNLKVSDTSLLEGQRMDFIYAMLVEVAYVNKTQKNETTDF