CuGenDBv2

Gene ID	CSPI06G21780
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	mediator of RNA polymerase II transcription subunit 33B-like
Genome location	Chr6:19747428..19749542
RNA-Seq Expression	CSPI06G21780
Synteny	CSPI06G21780
Gene Ontology terms	GO:2000762 - regulation of phenylpropanoid metabolic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR039638 - Mediator of RNA polymerase II transcription subunit 33A/B

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008449381.1 PREDICTED: mediator of RNA polymerase II transcription subunit 33B-like isoform X1 [Cucumis melo]

3.4e-135

96.86

Show/hide

Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        MAVS  PPGQLQGIAGLWDTVLE+TKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSV+LAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKLQPAAYRLYLELLSRHVFSST QIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLAL GEEKSAWLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
        LHDMELDVHDSFGEK+TENSESLLKVNTAKAIEIIGQFLQNKKT RILCLALRNM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

XP_011657513.1 mediator of RNA polymerase II transcription subunit 33B isoform X1 [Cucumis sativus]

4.5e-140

99.61

Show/hide

Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSV+LAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
        LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

XP_022155567.1 mediator of RNA polymerase II transcription subunit 33B-like [Momordica charantia]

9.2e-125

89.8

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Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        M VS  PP QLQG+AGLWD+VLELTKSAQDKNCDPLLWAVQLSS+LNSAGVSLPS++LAQLLVSHICWDNHVPIMWKFLEKAMTA+IVPPLLV+ALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKL+PAAYRLYLELLSRHVFSST QI GPNYQRIMQTIDDVLHL+QIF LQ CEPG+LMVELFFSIVWQLLDASLDDEGLL L  EE+SAWLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
         HDMELDVHDSF EKRTENSESLLKVNTAKAIEIIGQFLQNKKTARIL LA RNM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

XP_022963527.1 mediator of RNA polymerase II transcription subunit 33B-like [Cucurbita moschata]

7.8e-124

89.02

Show/hide

Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        MAVS  PPGQLQGIAG+WDTVLELTKSAQ+KN DPLLWAVQLSS+LNSA VSLPSV+LA LLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKL+PAAYRLYLELLSRHVFSST ++ GPNY RIMQTIDDVLHL+QIFGLQTCEPG+LMVELFFSIVW LLDASLDDEGLL L  EE+S WLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
         HDMELDVHDSFGEK+TENSE+LLKVNTAKAIEIIGQFLQNKKTARILCLA +NM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

XP_038887593.1 mediator of RNA polymerase II transcription subunit 33B isoform X1 [Benincasa hispida]

7.8e-132

94.51

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Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        MAVST PPGQLQ I+GLWD+VLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSV+LAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKL+PAAYRLYLE+LSRH+FS T QI GPNYQRIMQTIDDVLHLTQIFG+QTCEPGVLMVELFFSIVWQLLDASLDDEGLLAL GEEKS WLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
        LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KG79 Uncharacterized protein

2.2e-140

99.61

Show/hide

Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSV+LAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
        LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

A0A1S3BMJ1 mediator of RNA polymerase II transcription subunit 33B-like isoform X1

1.6e-135

96.86

Show/hide

Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        MAVS  PPGQLQGIAGLWDTVLE+TKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSV+LAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKLQPAAYRLYLELLSRHVFSST QIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLAL GEEKSAWLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
        LHDMELDVHDSFGEK+TENSESLLKVNTAKAIEIIGQFLQNKKT RILCLALRNM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

A0A6J1DPP9 mediator of RNA polymerase II transcription subunit 33B-like

4.5e-125

89.8

Show/hide

Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        M VS  PP QLQG+AGLWD+VLELTKSAQDKNCDPLLWAVQLSS+LNSAGVSLPS++LAQLLVSHICWDNHVPIMWKFLEKAMTA+IVPPLLV+ALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKL+PAAYRLYLELLSRHVFSST QI GPNYQRIMQTIDDVLHL+QIF LQ CEPG+LMVELFFSIVWQLLDASLDDEGLL L  EE+SAWLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
         HDMELDVHDSF EKRTENSESLLKVNTAKAIEIIGQFLQNKKTARIL LA RNM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

A0A6J1HFH4 mediator of RNA polymerase II transcription subunit 33B-like

3.8e-124

89.02

Show/hide

Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        MAVS  PPGQLQGIAG+WDTVLELTKSAQ+KN DPLLWAVQLSS+LNSA VSLPSV+LA LLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKL+PAAYRLYLELLSRHVFSST ++ GPNY RIMQTIDDVLHL+QIFGLQTCEPG+LMVELFFSIVW LLDASLDDEGLL L  EE+S WLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
         HDMELDVHDSFGEK+TENSE+LLKVNTAKAIEIIGQFLQNKKTARILCLA +NM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

A0A6J1HUY1 mediator of RNA polymerase II transcription subunit 33B-like

1.6e-122

87.84

Show/hide

Query:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
        MAVS  PPGQLQGIAG+WDTVLELTKSAQ+KN DPLLWAV LSS+LNSA VSLPSV+LAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR
Subjt:  MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTR

Query:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ
        AIPYRKL+PAAYRLYLELLSRHVFSST ++ GPNY RIMQTIDDVLHL+QIFGLQTCEPG+L+VELFFSIVW LLDASLDDEGLL L  EE+S WLIRPQ
Subjt:  AIPYRKLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQ

Query:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
         H+MELDVH+SFGEK+TENSE+LLKVNTAKAIEIIGQFLQNKKTARILCLA +NM
Subjt:  LHDMELDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

SwissProt top hits

e value

%identity

Alignment

F4IN69 Mediator of RNA polymerase II transcription subunit 33B

1.2e-71

56.8

Show/hide

Query:  LPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYR
        + P + Q    LW++V  L +SAQ+KN DPL WA+QL  TL SAG+SLPS DLAQ LV+HI W+NH P+ WK LEKA++  IVPPLLV+ALLS R IP R
Subjt:  LPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYR

Query:  KLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDME
        KL PAAYRLY+ELL RH FS    I  P Y + M +IDD+LHL++ FG+Q  EPG +++   FSIVW+LLDASLD+EGLL L   ++S W   P  HDM+
Subjt:  KLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDME

Query:  LDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
        LD  ++   KR EN ++L K NT  AIE+I +FLQNK T+RIL LA +NM
Subjt:  LDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

Q9LUG9 Mediator of RNA polymerase II transcription subunit 33A

8.0e-63

51.26

Show/hide

Query:  LWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYRKLQPAAYRLYL
        +WD V+ELTK AQ+   DP LWA QLSS L    V LPS +LA+++VS+ICWDN+VPI+WKFLE+AM  ++V PL+V+ALL+ R +P R  Q AAYR+YL
Subjt:  LWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYRKLQPAAYRLYL

Query:  ELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDMELDVHDSFGEKR
        ELL R++F+    I GP+YQ++M ++ ++L L+++F L T +PGVL+VE  F +V QLLDA+L DEGLL L  +  S WL++ Q  DME+D  + + EK 
Subjt:  ELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDMELDVHDSFGEKR

Query:  TENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRN
        T + E L  +NT  AIE+I +FL+N   AR+L L   N
Subjt:  TENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRN

Arabidopsis top hits

e value

%identity

Alignment

AT2G48110.1 reduced epidermal fluorescence 4

8.7e-73

56.8

Show/hide

Query:  LPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYR
        + P + Q    LW++V  L +SAQ+KN DPL WA+QL  TL SAG+SLPS DLAQ LV+HI W+NH P+ WK LEKA++  IVPPLLV+ALLS R IP R
Subjt:  LPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYR

Query:  KLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDME
        KL PAAYRLY+ELL RH FS    I  P Y + M +IDD+LHL++ FG+Q  EPG +++   FSIVW+LLDASLD+EGLL L   ++S W   P  HDM+
Subjt:  KLQPAAYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDME

Query:  LDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM
        LD  ++   KR EN ++L K NT  AIE+I +FLQNK T+RIL LA +NM
Subjt:  LDVHDSFGEKRTENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

AT3G23590.1 REF4-related 1

5.7e-64

51.26

Show/hide

Query:  LWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYRKLQPAAYRLYL
        +WD V+ELTK AQ+   DP LWA QLSS L    V LPS +LA+++VS+ICWDN+VPI+WKFLE+AM  ++V PL+V+ALL+ R +P R  Q AAYR+YL
Subjt:  LWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYRKLQPAAYRLYL

Query:  ELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDMELDVHDSFGEKR
        ELL R++F+    I GP+YQ++M ++ ++L L+++F L T +PGVL+VE  F +V QLLDA+L DEGLL L  +  S WL++ Q  DME+D  + + EK 
Subjt:  ELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDMELDVHDSFGEKR

Query:  TENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRN
        T + E L  +NT  AIE+I +FL+N   AR+L L   N
Subjt:  TENSESLLKVNTAKAIEIIGQFLQNKKTARILCLALRN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGTTTCCACTCTACCGCCTGGTCAACTGCAAGGAATTGCTGGTTTATGGGACACTGTGTTGGAGCTTACGAAGTCGGCACAGGACAAGAATTGTGATCCGCTGCT
TTGGGCGGTTCAATTGAGCTCCACTCTCAATTCCGCTGGCGTTTCCTTGCCGTCGGTCGATCTCGCCCAGCTCCTGGTCTCTCATATTTGTTGGGATAATCACGTTCCTA
TCATGTGGAAATTTCTTGAGAAAGCAATGACCGCGAGAATCGTTCCTCCTCTGCTGGTTATTGCTCTTCTTTCTACCAGGGCAATTCCATATAGAAAGCTTCAACCTGCA
GCATACAGGCTTTACCTGGAACTTCTAAGCAGACACGTCTTTTCATCAACATGCCAAATCTATGGACCCAATTACCAAAGGATCATGCAAACCATCGATGATGTTCTTCA
TCTGACCCAGATATTTGGTCTTCAAACATGTGAACCTGGGGTACTTATGGTTGAATTATTCTTTTCCATTGTTTGGCAGCTGCTTGATGCATCATTGGATGATGAAGGAT
TGTTGGCACTTCATGGAGAAGAAAAATCAGCGTGGCTAATCAGGCCACAGCTACATGATATGGAACTAGATGTTCATGATTCTTTTGGTGAGAAGAGAACCGAGAACAGT
GAAAGTTTGCTTAAAGTAAACACTGCGAAGGCTATTGAGATAATTGGGCAATTCCTGCAAAATAAGAAAACTGCAAGGATTTTGTGCTTGGCCCTTCGAAATATGTAA

mRNA sequence

Show/hide mRNA sequence

TGTTGGATGGTTAAAATGTAATGAATCCATTTCAATTGCTTGAACCGGGGTTTTTCTTCTTTGATTGGTTTACCTTTGCGCGCCGAAGAACAATTCCATCAGACTCATGA
ATTGGCGAGTGACCTTCGAAACTCCCTTCCACAAACCCCAAAAATTTCAATCTCCTTGCGATTCACCATTCTGTTTCTCTTCCTGAGGAAGAGTTTCTCTGCCTTTGGAT
CTCCCATGGCGGTTTCCACTCTACCGCCTGGTCAACTGCAAGGAATTGCTGGTTTATGGGACACTGTGTTGGAGCTTACGAAGTCGGCACAGGACAAGAATTGTGATCCG
CTGCTTTGGGCGGTTCAATTGAGCTCCACTCTCAATTCCGCTGGCGTTTCCTTGCCGTCGGTCGATCTCGCCCAGCTCCTGGTCTCTCATATTTGTTGGGATAATCACGT
TCCTATCATGTGGAAATTTCTTGAGAAAGCAATGACCGCGAGAATCGTTCCTCCTCTGCTGGTTATTGCTCTTCTTTCTACCAGGGCAATTCCATATAGAAAGCTTCAAC
CTGCAGCATACAGGCTTTACCTGGAACTTCTAAGCAGACACGTCTTTTCATCAACATGCCAAATCTATGGACCCAATTACCAAAGGATCATGCAAACCATCGATGATGTT
CTTCATCTGACCCAGATATTTGGTCTTCAAACATGTGAACCTGGGGTACTTATGGTTGAATTATTCTTTTCCATTGTTTGGCAGCTGCTTGATGCATCATTGGATGATGA
AGGATTGTTGGCACTTCATGGAGAAGAAAAATCAGCGTGGCTAATCAGGCCACAGCTACATGATATGGAACTAGATGTTCATGATTCTTTTGGTGAGAAGAGAACCGAGA
ACAGTGAAAGTTTGCTTAAAGTAAACACTGCGAAGGCTATTGAGATAATTGGGCAATTCCTGCAAAATAAGAAAACTGCAAGGATTTTGTGCTTGGCCCTTCGAAATATG
TAA

Protein sequence

Show/hide protein sequence

MAVSTLPPGQLQGIAGLWDTVLELTKSAQDKNCDPLLWAVQLSSTLNSAGVSLPSVDLAQLLVSHICWDNHVPIMWKFLEKAMTARIVPPLLVIALLSTRAIPYRKLQPA
AYRLYLELLSRHVFSSTCQIYGPNYQRIMQTIDDVLHLTQIFGLQTCEPGVLMVELFFSIVWQLLDASLDDEGLLALHGEEKSAWLIRPQLHDMELDVHDSFGEKRTENS
ESLLKVNTAKAIEIIGQFLQNKKTARILCLALRNM

CSPI06G21780 (gene) of Cucumber (PI 183967) v1 genome