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CSPI06G21990 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G21990
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionpreprotein translocase subunit SCY2, chloroplastic
Genome locationChr6:19934985..19936173
RNA-Seq ExpressionCSPI06G21990
SyntenyCSPI06G21990
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0010027 - thylakoid membrane organization (biological process)
GO:0072598 - protein localization to chloroplast (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005048 - signal sequence binding (molecular function)
GO:0008320 - protein transmembrane transporter activity (molecular function)
InterPro domainsIPR002208 - SecY/SEC61-alpha family
IPR023201 - SecY domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057302.1 preprotein translocase subunit SCY2 [Cucumis melo var. makuwa]4.7e-4297.85Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKASIEYLTK+QASTRFWGGLLLSFLATTSS+LDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

XP_004140093.2 preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus]1.6e-42100Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

XP_008449450.1 PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo]4.7e-4297.85Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKASIEYLTK+QASTRFWGGLLLSFLATTSS+LDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

XP_038888194.1 preprotein translocase subunit SCY2, chloroplastic isoform X1 [Benincasa hispida]4.7e-4297.85Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSS+LDHYLRS+NAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

XP_038888196.1 preprotein translocase subunit SCY2, chloroplastic isoform X3 [Benincasa hispida]4.7e-4297.85Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSS+LDHYLRS+NAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

TrEMBL top hitse value%identityAlignment
A0A0A0KDV7 Uncharacterized protein7.8e-43100Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

A0A1S3BM25 preprotein translocase subunit SCY2, chloroplastic2.3e-4297.85Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKASIEYLTK+QASTRFWGGLLLSFLATTSS+LDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

A0A5A7UN66 Preprotein translocase subunit SCY22.3e-4297.85Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKASIEYLTK+QASTRFWGGLLLSFLATTSS+LDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

A0A6J1DMV0 preprotein translocase subunit SCY2, chloroplastic isoform X11.1e-4196.77Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKA+IEYLTKIQASTRFWGGLLLS LATTSSVLDHYLRS+NAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

A0A6J1HFX8 preprotein translocase subunit SCY2, chloroplastic5.0e-4296.77Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKA+IEYLTKIQASTRFWGGLLLSFLATTSS+LDHYLRS+NAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

SwissProt top hitse value%identityAlignment
F4IQV7 Preprotein translocase subunit SCY2, chloroplastic1.8e-4190.32Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKA+IEYLTKIQASTRFWGGLLLSFLAT S+VLDHYLRS+N GF+IGFTSVLIIVGSIIELRRSY AYNVMPSLS AL+RYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV

P28527 Protein translocase subunit SecY2.1e-0531.46Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALR
        M + I  ++PGKA+ EYL K      F G L L+F+A   ++++  L +++    +G TS+LIIVG  ++  +  Q Y +  +    +R
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALR

P38397 Protein translocase subunit SecY (Fragment)2.7e-0833.71Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALR
        M + IP ++PGKA+ +YL K      F G L L+F+A   S++++ + S++    +G TS+LI+VG  I+  R  Q Y +  +  N ++
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALR

P51297 Protein translocase subunit SecY2.1e-0537.18Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAY
        MGA IPNI+PG+A+I+YL  I     F G   L  +A    +++   +  N    +G TS+LI+VG  I+  +  Q Y
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAY

Q37143 Protein translocase subunit SecY1.2e-0537.97Show/hide
Query:  MGARIPNIKPGKASIEYL-TKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAY
        MGA IPNI+PG  +I+YL T+I   T    G    F  T    + +Y+  +N    +G TS+LI+VG  I+  +  Q Y
Subjt:  MGARIPNIKPGKASIEYL-TKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAY

Arabidopsis top hitse value%identityAlignment
AT2G31530.1 SecY protein transport family protein1.3e-4290.32Show/hide
Query:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV
        MGARIPNIKPGKA+IEYLTKIQASTRFWGGLLLSFLAT S+VLDHYLRS+N GF+IGFTSVLIIVGSIIELRRSY AYNVMPSLS AL+RYGV
Subjt:  MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCAAGGATACCGAACATTAAACCAGGGAAAGCTTCTATAGAGTACCTAACGAAAATTCAAGCATCAACACGCTTTTGGGGAGGGCTACTGTTGAGTTTTTTGGC
AACGACATCATCTGTTCTTGATCATTACTTACGCAGTGTTAATGCCGGTTTTGCAATTGGTTTTACATCAGTTCTGATTATTGTTGGTTCCATTATTGAACTCAGAAGAT
CTTACCAAGCATATAATGTCATGCCAAGTTTAAGCAATGCTTTGAGGCGCTATGGTGTATAA
mRNA sequenceShow/hide mRNA sequence
CAAATATAACTATGTAAATTGAATTTGTTAGTCCACTCTCACATGTTCCTTTACCTTTCCAGGCTAACCTGCCAAAAGAGATTTCAGACTATTTAAATAAGATGGGAGCA
AGGATACCGAACATTAAACCAGGGAAAGCTTCTATAGAGTACCTAACGAAAATTCAAGCATCAACACGCTTTTGGGGAGGGCTACTGTTGAGTTTTTTGGCAACGACATC
ATCTGTTCTTGATCATTACTTACGCAGTGTTAATGCCGGTTTTGCAATTGGTTTTACATCAGTTCTGATTATTGTTGGTTCCATTATTGAACTCAGAAGATCTTACCAAG
CATATAATGTCATGCCAAGTTTAAGCAATGCTTTGAGGCGCTATGGTGTATAACAAGTTCAAATGATGCTCCTAGTGGTTCTGTATTTGTGCCTCAAAAGTATCCAATAA
TCTCTTTCAAGTATAATTGTCTGATTCCTCCTGGCTCGTAGCTGGACTAGAACAGAGCCTTTCATCCCTTCCTCAATTCTTTTTTAGTGCTGAGGACTGCAGAGTTTCAG
AATAGTGGCCATCCATAACAATGTATACCCACACAAGTACCAAGAAAATTTTGATCCTCTGGTCTTTGAAACATCTAGCGAACAAGGGACACAAGCATTGGAATGTTAAA
GATGCTAATCACGAGTGTAGCTGCAAGATCTTATTCTTGAGCCTAATTTTGACCATTTTCTCCCTATTTTGTATATATAAATTCTGTAATATGAATCTTAACATATTTAT
TAGATTATAGGTACATCGGTG
Protein sequenceShow/hide protein sequence
MGARIPNIKPGKASIEYLTKIQASTRFWGGLLLSFLATTSSVLDHYLRSVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV