; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G22350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G22350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranscription factor bHLH160
Genome locationChr6:20271126..20273143
RNA-Seq ExpressionCSPI06G22350
SyntenyCSPI06G22350
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449406.1 PREDICTED: transcription factor bHLH100 [Cucumis melo]2.3e-7057.89Show/hide
Query:  MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG-SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN
        MSL PWEEHILIDEDNGIEE+E PLRNWSNNNGELEEI   I+ SKSGEEALLLPNEIIG SLVEDSTLLGL+E+D +I GVLERENSKLFPP SIN HN
Subjt:  MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG-SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN

Query:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------
        EEPSNSNK NAKKEEHNARERQRRL+LSHSYFSLRSLLPNARRS                                                        
Subjt:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------

Query:  -----------------------------------------------KAEAEGLRIIGASTVSVS-HDHQILTSHLHIQMMDRSLQEAADYESMLRKRVI
                                                       KAE EGLRIIGASTVSVS HDHQILTSHLH+QMMDRSLQEAAD +S+ RKRVI
Subjt:  -----------------------------------------------KAEAEGLRIIGASTVSVS-HDHQILTSHLHIQMMDRSLQEAADYESMLRKRVI

Query:  SWLC
        SWLC
Subjt:  SWLC

XP_022963582.1 transcription factor bHLH160 [Cucurbita moschata]2.1e-2337.24Show/hide
Query:  MSLIPWEE-HILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN
        M++ PWE  + L DE+NG E+   P                     K GE    L  EI GS+ E + LLGLEE+   I G   REN+   P  + N+  
Subjt:  MSLIPWEE-HILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN

Query:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------
         EPS     NAKKEEHNARERQRR++LS  YFSLRSLLPNARRS                                                        
Subjt:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------

Query:  ----------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC
                                          KAE EGLRIIGASTV VS  H  LTSHLH Q MD+S++E  DY+S+LRKRVISWLC
Subjt:  ----------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC

XP_023553728.1 transcription factor bHLH160 [Cucurbita pepo subsp. pepo]7.2e-2437.93Show/hide
Query:  MSLIPWEE-HILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN
        M++ PWE  + L DE+NG E+   P                     K GE    L  EI GS+ E + LLGLEE+   I G L REN+   P  + N+  
Subjt:  MSLIPWEE-HILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN

Query:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------
         EPS     NAKKEEHNARERQRR++LS  YFSLRSLLPNARRS                                                        
Subjt:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------

Query:  ----------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC
                                          KAE EGLRIIGASTV VS  H  LTSHLH Q MDRS++E  DY+S+LRKRVISWLC
Subjt:  ----------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC

XP_031743831.1 transcription factor bHLH160 [Cucumis sativus]2.0e-9066.78Show/hide
Query:  MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNE
        MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNE
Subjt:  MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNE

Query:  EPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS---------------------------------------------------------
        EPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS                                                         
Subjt:  EPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS---------------------------------------------------------

Query:  ------------------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC
                                                  KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC
Subjt:  ------------------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC

XP_038888939.1 transcription factor bHLH160 [Benincasa hispida]6.2e-4447.26Show/hide
Query:  MSLIPWEEHILIDEDNGIEEKENP------LRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTS
        MSL  WEE+IL++E+NGI E ENP      L + SNNNGELEE     Q S++GE   LL +EI+GSL+E +TLLGLEEN   IDGVLE+E+SKL P + 
Subjt:  MSLIPWEEHILIDEDNGIEEKENP------LRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTS

Query:  INVHNEEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS---------------------------------------------------
        IN  N EPS +NKANAKKEEHNARERQRR++LSHSYFSLRSLLPNARRS                                                   
Subjt:  INVHNEEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS---------------------------------------------------

Query:  -----------------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRV
                                                 KA+AEGL IIGASTVSVSHDH  L+ HLHIQ MDRS+QEAADY+S+LRK++
Subjt:  -----------------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRV

TrEMBL top hitse value%identityAlignment
A0A0A0KGG0 BHLH domain-containing protein1.7e-103100Show/hide
Query:  MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNE
        MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNE
Subjt:  MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNE

Query:  EPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC
        EPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC
Subjt:  EPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC

A0A1S3BLZ5 transcription factor bHLH1001.1e-7057.89Show/hide
Query:  MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG-SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN
        MSL PWEEHILIDEDNGIEE+E PLRNWSNNNGELEEI   I+ SKSGEEALLLPNEIIG SLVEDSTLLGL+E+D +I GVLERENSKLFPP SIN HN
Subjt:  MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG-SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN

Query:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------
        EEPSNSNK NAKKEEHNARERQRRL+LSHSYFSLRSLLPNARRS                                                        
Subjt:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------

Query:  -----------------------------------------------KAEAEGLRIIGASTVSVS-HDHQILTSHLHIQMMDRSLQEAADYESMLRKRVI
                                                       KAE EGLRIIGASTVSVS HDHQILTSHLH+QMMDRSLQEAAD +S+ RKRVI
Subjt:  -----------------------------------------------KAEAEGLRIIGASTVSVS-HDHQILTSHLHIQMMDRSLQEAADYESMLRKRVI

Query:  SWLC
        SWLC
Subjt:  SWLC

A0A6J1DXT5 transcription factor bHLH1602.1e-2140.61Show/hide
Query:  EENDHSID---GVLERENSKLFP--PTSIN------VHNEEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS-----------------
        EE+  +ID   G +EREN  LFP  P SIN       H  + SNSN ANAKKEEHNA+ER+RR+KLS +YFSLRSLLPN+RRS                 
Subjt:  EENDHSID---GVLERENSKLFP--PTSIN------VHNEEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS-----------------

Query:  --------------------------------------------------------------------------KAEAEGLRIIGASTVSVSHDHQILTS
                                                                                  KAEAEG+ IIGASTVSVS DH  LT 
Subjt:  --------------------------------------------------------------------------KAEAEGLRIIGASTVSVSHDHQILTS

Query:  HLHIQMMDRSLQEAADYESMLRKRVISWL
        HLH+Q M+ SLQE+ADYES+LRK+VISWL
Subjt:  HLHIQMMDRSLQEAADYESMLRKRVISWL

A0A6J1HFM3 transcription factor bHLH1601.0e-2337.24Show/hide
Query:  MSLIPWEE-HILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN
        M++ PWE  + L DE+NG E+   P                     K GE    L  EI GS+ E + LLGLEE+   I G   REN+   P  + N+  
Subjt:  MSLIPWEE-HILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN

Query:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------
         EPS     NAKKEEHNARERQRR++LS  YFSLRSLLPNARRS                                                        
Subjt:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------

Query:  ----------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC
                                          KAE EGLRIIGASTV VS  H  LTSHLH Q MD+S++E  DY+S+LRKRVISWLC
Subjt:  ----------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC

A0A6J1HVK8 transcription factor bHLH1609.4e-2237.5Show/hide
Query:  MSLIPWEE-HILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN
        M++ PWE  + L DE+NG EE + P                     K GE    L  E  GS+ E + LLGLEE+   I G   REN + FPP ++N  N
Subjt:  MSLIPWEE-HILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHN

Query:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------
         EPS     NAKKEEHNARERQRR++LS  YFSLRSLLPNARRS                                                        
Subjt:  EEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRS--------------------------------------------------------

Query:  ----------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISW
                                          KAE +GLRIIGAS +SVS  H  LTSHLH Q MDRS++E  DY+S+LRKRVISW
Subjt:  ----------------------------------KAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTGATACCATGGGAGGAACATATATTGATTGATGAAGACAATGGAATTGAAGAGAAAGAAAATCCATTAAGAAATTGGAGTAATAATAATGGGGAATTAGAAGA
AATATTTATCGATATCCAATCATCAAAAAGTGGAGAAGAAGCATTATTATTACCAAATGAAATAATTGGATCACTTGTGGAAGATTCAACATTATTGGGTTTGGAGGAAA
ATGATCATAGTATTGATGGAGTTTTAGAGAGAGAAAATTCAAAATTATTTCCACCAACATCCATTAATGTTCATAATGAAGAACCCTCAAATTCAAATAAAGCAAATGCA
AAGAAAGAAGAACACAATGCTAGAGAAAGACAAAGGAGGTTGAAACTCTCTCACTCCTATTTTTCACTTCGCTCTTTGCTTCCCAATGCTAGAAGATCAAAGGCAGAAGC
AGAAGGCCTAAGGATCATTGGTGCTTCCACAGTTTCTGTTTCTCATGACCATCAGATTCTTACCTCCCATTTGCATATTCAGATGATGGATAGGAGTTTACAAGAAGCTG
CTGATTATGAATCAATGTTAAGAAAAAGGGTAATCTCTTGGCTATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTGATACCATGGGAGGAACATATATTGATTGATGAAGACAATGGAATTGAAGAGAAAGAAAATCCATTAAGAAATTGGAGTAATAATAATGGGGAATTAGAAGA
AATATTTATCGATATCCAATCATCAAAAAGTGGAGAAGAAGCATTATTATTACCAAATGAAATAATTGGATCACTTGTGGAAGATTCAACATTATTGGGTTTGGAGGAAA
ATGATCATAGTATTGATGGAGTTTTAGAGAGAGAAAATTCAAAATTATTTCCACCAACATCCATTAATGTTCATAATGAAGAACCCTCAAATTCAAATAAAGCAAATGCA
AAGAAAGAAGAACACAATGCTAGAGAAAGACAAAGGAGGTTGAAACTCTCTCACTCCTATTTTTCACTTCGCTCTTTGCTTCCCAATGCTAGAAGATCAAAGGCAGAAGC
AGAAGGCCTAAGGATCATTGGTGCTTCCACAGTTTCTGTTTCTCATGACCATCAGATTCTTACCTCCCATTTGCATATTCAGATGATGGATAGGAGTTTACAAGAAGCTG
CTGATTATGAATCAATGTTAAGAAAAAGGGTAATCTCTTGGCTATGTTGA
Protein sequenceShow/hide protein sequence
MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANA
KKEEHNARERQRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC