; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI06G23350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI06G23350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationChr6:21027703..21028993
RNA-Seq ExpressionCSPI06G23350
SyntenyCSPI06G23350
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061726.1 putative CCR4-associated factor 1-like protein 11 [Cucumis melo var. makuwa]7.3e-14192.83Show/hide
Query:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF
        MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTL RHPL PSDHYLLLKSNVDALNLIQLGLTLSDA GNLPTLGTKNSFIWEFNFRDF
Subjt:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF

Query:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
        DVAR PH P SIELLKQQGIDFHRNRTHGVCSS+FADL+MSSGLLCN+SLTWVTFHSAYDFGYLVKILTRTKLPSRL DFLNIL  LFG KVYDVKHMMR
Subjt:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR

Query:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        FCDGLYGGLDR+AKTLDL+RAVGKSHQAGSDSLLT+QAFKKM DVYFSKDGP+KHAGVLFGLE+Y
Subjt:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

XP_004140166.1 probable CCR4-associated factor 1 homolog 9 [Cucumis sativus]7.0e-15299.62Show/hide
Query:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF
        MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTL RHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF
Subjt:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF

Query:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
        DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
Subjt:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR

Query:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
Subjt:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

XP_008449941.1 PREDICTED: probable CCR4-associated factor 1 homolog 11, partial [Cucumis melo]2.0e-13892.69Show/hide
Query:  RQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDVARD
        RQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTL RHPL PSDHYLLLKSNVDALNLIQLGLTLSDA GNLPTLGTKNSFIWEFNFRDFDVAR 
Subjt:  RQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDVARD

Query:  PHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFCDGL
        PH P SIELLKQQGIDFHRNRTHGVCSS+FADL+MSSGLLCN+SLTWVTFHSAYDFGYLVKILTRTKLPSRL DFLNIL  LFG KVYDVKHMMRFCDGL
Subjt:  PHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFCDGL

Query:  YGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        YGGLDR+AKTLDL+RAVGKSHQAGSDSLLT+QAFKKM DVYFSKDGP+KHAGVLFGLE+Y
Subjt:  YGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

XP_022957732.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata]1.5e-11777.95Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV
        I  R+VWD NL HEF LI +L+ RYPFIS+DTEFPGV++RP    HP RPSDHYLLLKSNVDALNLIQ+GLTLSDA GNLPTLGT   FIWEFNFRDFDV
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV

Query:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC
         RD HAPDSI+LLK+QGIDF RNR HGV S+RF++L+MSSGLLCN S++WVTFHSAYDFGYLVKILTR KLPSRL +FL ILK  FG KVYDVKHMMRFC
Subjt:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC

Query:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        D LYGGL+R+AKTL +DRAVGK HQAGSDSLLT+ AF+KM DVYF KDGP+KHAGVL+GLE+Y
Subjt:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

XP_038901771.1 probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]1.7e-12683.77Show/hide
Query:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF
        M IQ RQVWD NL +EFNLI  L HR+PFIS+DTEFPGV+IRP L R  LRPSDHYLLLKSNVDALNLIQ+GLTLSDA GNLPTLGT N FIWEFNFRDF
Subjt:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF

Query:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
        DV RD HAPDSIELLK+QGIDF RNR HGV SSRFA+L+MSSGLLCNDS+TWVTFHSAYDFGYLVKILTRTKLP+RL DFL IL+GLFG KVYDVKHMMR
Subjt:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR

Query:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        FCDGLYGGLDR+AKTL +DRAVGKSHQAGSDSLLT+QAF+KM DVYF KDGP+KHAGVL+GLE+Y
Subjt:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

TrEMBL top hitse value%identityAlignment
A0A0A0KI60 Poly(A)-specific ribonuclease3.4e-15299.62Show/hide
Query:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF
        MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTL RHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF
Subjt:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF

Query:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
        DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
Subjt:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR

Query:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
Subjt:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

A0A1S3BNU2 Poly(A)-specific ribonuclease9.6e-13992.69Show/hide
Query:  RQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDVARD
        RQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTL RHPL PSDHYLLLKSNVDALNLIQLGLTLSDA GNLPTLGTKNSFIWEFNFRDFDVAR 
Subjt:  RQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDVARD

Query:  PHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFCDGL
        PH P SIELLKQQGIDFHRNRTHGVCSS+FADL+MSSGLLCN+SLTWVTFHSAYDFGYLVKILTRTKLPSRL DFLNIL  LFG KVYDVKHMMRFCDGL
Subjt:  PHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFCDGL

Query:  YGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        YGGLDR+AKTLDL+RAVGKSHQAGSDSLLT+QAFKKM DVYFSKDGP+KHAGVLFGLE+Y
Subjt:  YGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

A0A5D3B887 Poly(A)-specific ribonuclease3.5e-14192.83Show/hide
Query:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF
        MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTL RHPL PSDHYLLLKSNVDALNLIQLGLTLSDA GNLPTLGTKNSFIWEFNFRDF
Subjt:  MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDF

Query:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
        DVAR PH P SIELLKQQGIDFHRNRTHGVCSS+FADL+MSSGLLCN+SLTWVTFHSAYDFGYLVKILTRTKLPSRL DFLNIL  LFG KVYDVKHMMR
Subjt:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR

Query:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        FCDGLYGGLDR+AKTLDL+RAVGKSHQAGSDSLLT+QAFKKM DVYFSKDGP+KHAGVLFGLE+Y
Subjt:  FCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

A0A6J1GZY2 Poly(A)-specific ribonuclease7.2e-11877.95Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV
        I  R+VWD NL HEF LI +L+ RYPFIS+DTEFPGV++RP    HP RPSDHYLLLKSNVDALNLIQ+GLTLSDA GNLPTLGT   FIWEFNFRDFDV
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV

Query:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC
         RD HAPDSI+LLK+QGIDF RNR HGV S+RF++L+MSSGLLCN S++WVTFHSAYDFGYLVKILTR KLPSRL +FL ILK  FG KVYDVKHMMRFC
Subjt:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC

Query:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        D LYGGL+R+AKTL +DRAVGK HQAGSDSLLT+ AF+KM DVYF KDGP+KHAGVL+GLE+Y
Subjt:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

A0A6J1K4S7 Poly(A)-specific ribonuclease9.3e-11877.95Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV
        I  R+VWD NL HEF LI  L+ RYPFIS+DTEFPGV++RP    HP RPSDHYLLLKSNVDALNLIQ+GLTLSDA GNLPTLGT   FIWEFNFRDFDV
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV

Query:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC
         RD HAPDSI+LLK+QGIDF RNR HGV S+RF++L+MSSGLLCN S++WVTFHSAYDFGYLVKILTR KLPSRL +FL ILK  FG KVYDVKHMMRFC
Subjt:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC

Query:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        D LYGGL+R+AKTL +DRAVGK HQAGSDSLLT+ AF+KM DVYF KDGP+KHAGVL+GLE+Y
Subjt:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

SwissProt top hitse value%identityAlignment
Q9FMS6 Probable CCR4-associated factor 1 homolog 116.7e-9764.93Show/hide
Query:  LIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLP-RHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNS--FIWEFNFR
        +I  R VW  NL  EF+LI  ++  YPFIS+DTEFPGV+ +  L       P+  Y LLKSNVDAL+LIQ+GLTLSDA GNLP LG + +  +IWEFNFR
Subjt:  LIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLP-RHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNS--FIWEFNFR

Query:  DFDVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHM
        DFDV RDPHAPDSIELL++ GIDF RNR  GV S RFA+L+MSSGL+CN+S++WVTFHSAYDFGYLVKILTR +LP  L++FL +L+  FG +VYDVKH+
Subjt:  DFDVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHM

Query:  MRFCD-GLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        MRFC+  LYGGLDR+A++L+++RAVGK HQAGSDSLLT+QAF++M D+YF +DG +KHAGVL+GLE++
Subjt:  MRFCD-GLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

Q9LEU4 Probable CCR4-associated factor 1 homolog 102.8e-7150.77Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV
        I  R+VWD NL+ EF LI +++ ++ +I++DTEFPGV+++P +         +Y  LK NVD L LIQ+GLT SD +GNLPT GT    IW+FNFR+F++
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV

Query:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC
          D +A +SIELL+Q GIDF +N   G+   RF +L+MSSG++ ND+++WVTFH  YDFGYLVK+LT  +LP +  DF  +L   F   VYD+KH+M FC
Subjt:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC

Query:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGL
        +GL+GGL+RLA+ + ++R VG  HQAGSDSLLT  +F+K+ + YF     +K+ GVL+GL
Subjt:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGL

Q9LXM2 Probable CCR4-associated factor 1 homolog 92.3e-9764.29Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLG--TKNSFIWEFNFRDF
        + TR+VW  NL  EF LI++++  YPFIS+DTEFPGV+ +  L      P D Y LLK+NVDAL+LIQ+GLTLSD +GNLP LG      FIWEFNFRDF
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLG--TKNSFIWEFNFRDF

Query:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
        DVARD HAPDSIELL++QGIDF RN   GV S RFA+L+MSSGL+CN+ ++WVTFHSAYDFGYL+KILTR +LP  L +F  +++ LFG++VYDVKHMM+
Subjt:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR

Query:  FCD-GLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        FC+  L+GGLDR+A+TL+++RAVGK HQAGSDSLLT+ AF++M D+YF +DGP+KHAGVL+GLE++
Subjt:  FCD-GLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

Q9SAI2 Probable CCR4-associated factor 1 homolog 62.7e-6950.57Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV
        IQ R+VW+ NL  E +LI  ++  +P++++DTEFPG+++RP +         HY  LK+NV+ L +IQLGLT S+  GNLPT GT    IW+FNFR+FD+
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV

Query:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC
          D  A DSIELLKQ GID  +N   G+ S RFA+L+MSSG++ N+++ WVTFHS YDFGYL+K+LT   LP    DF  ++   F   VYD+KH+M+FC
Subjt:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC

Query:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGP-DKHAGVLFGL
        + L+GGL++LA+ L+++R VG  HQAGSDSLLT   F+K+ + +F   GP  K++GVL+GL
Subjt:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGP-DKHAGVLFGL

Q9SKZ2 Probable CCR4-associated factor 1 homolog 71.8e-7050.96Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSF-IWEFNFRDFD
        IQ R+VW+ NL  E  LI +++  +PF+++DTEFPG++ RP +         HY  LK+NV+ L +IQLGLT SD  GNLPT GT N + IW+FNFR+FD
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSF-IWEFNFRDFD

Query:  VARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRF
        +  D +A DSIELL+Q GIDF +N   G+ S RFA+L+MSSG++ N+++ WVTFHS YDFGYL+K+LT   LP     F  ++   F  +VYD+KH+M+F
Subjt:  VARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRF

Query:  CDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGL
        C+ L+GGL++LA+ LD++R VG  HQAGSDSLLT   F+K+ + +F     +K++GVL+GL
Subjt:  CDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGL

Arabidopsis top hitse value%identityAlignment
AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.9e-7050.57Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV
        IQ R+VW+ NL  E +LI  ++  +P++++DTEFPG+++RP +         HY  LK+NV+ L +IQLGLT S+  GNLPT GT    IW+FNFR+FD+
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV

Query:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC
          D  A DSIELLKQ GID  +N   G+ S RFA+L+MSSG++ N+++ WVTFHS YDFGYL+K+LT   LP    DF  ++   F   VYD+KH+M+FC
Subjt:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC

Query:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGP-DKHAGVLFGL
        + L+GGL++LA+ L+++R VG  HQAGSDSLLT   F+K+ + +F   GP  K++GVL+GL
Subjt:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGP-DKHAGVLFGL

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-7150.96Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSF-IWEFNFRDFD
        IQ R+VW+ NL  E  LI +++  +PF+++DTEFPG++ RP +         HY  LK+NV+ L +IQLGLT SD  GNLPT GT N + IW+FNFR+FD
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSF-IWEFNFRDFD

Query:  VARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRF
        +  D +A DSIELL+Q GIDF +N   G+ S RFA+L+MSSG++ N+++ WVTFHS YDFGYL+K+LT   LP     F  ++   F  +VYD+KH+M+F
Subjt:  VARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRF

Query:  CDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGL
        C+ L+GGL++LA+ LD++R VG  HQAGSDSLLT   F+K+ + +F     +K++GVL+GL
Subjt:  CDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGL

AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-9864.29Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLG--TKNSFIWEFNFRDF
        + TR+VW  NL  EF LI++++  YPFIS+DTEFPGV+ +  L      P D Y LLK+NVDAL+LIQ+GLTLSD +GNLP LG      FIWEFNFRDF
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLG--TKNSFIWEFNFRDF

Query:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR
        DVARD HAPDSIELL++QGIDF RN   GV S RFA+L+MSSGL+CN+ ++WVTFHSAYDFGYL+KILTR +LP  L +F  +++ LFG++VYDVKHMM+
Subjt:  DVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMR

Query:  FCD-GLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        FC+  L+GGLDR+A+TL+++RAVGK HQAGSDSLLT+ AF++M D+YF +DGP+KHAGVL+GLE++
Subjt:  FCD-GLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY

AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-7250.77Show/hide
Query:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV
        I  R+VWD NL+ EF LI +++ ++ +I++DTEFPGV+++P +         +Y  LK NVD L LIQ+GLT SD +GNLPT GT    IW+FNFR+F++
Subjt:  IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDV

Query:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC
          D +A +SIELL+Q GIDF +N   G+   RF +L+MSSG++ ND+++WVTFH  YDFGYLVK+LT  +LP +  DF  +L   F   VYD+KH+M FC
Subjt:  ARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFC

Query:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGL
        +GL+GGL+RLA+ + ++R VG  HQAGSDSLLT  +F+K+ + YF     +K+ GVL+GL
Subjt:  DGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGL

AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.8e-9864.93Show/hide
Query:  LIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLP-RHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNS--FIWEFNFR
        +I  R VW  NL  EF+LI  ++  YPFIS+DTEFPGV+ +  L       P+  Y LLKSNVDAL+LIQ+GLTLSDA GNLP LG + +  +IWEFNFR
Subjt:  LIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLP-RHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNS--FIWEFNFR

Query:  DFDVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHM
        DFDV RDPHAPDSIELL++ GIDF RNR  GV S RFA+L+MSSGL+CN+S++WVTFHSAYDFGYLVKILTR +LP  L++FL +L+  FG +VYDVKH+
Subjt:  DFDVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHM

Query:  MRFCD-GLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY
        MRFC+  LYGGLDR+A++L+++RAVGK HQAGSDSLLT+QAF++M D+YF +DG +KHAGVL+GLE++
Subjt:  MRFCD-GLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATCCAAACCCGTCAGGTCTGGGATCTCAATCTCCTTCATGAATTCAATCTCATCACTCAACTCCTCCACCGCTACCCTTTCATCTCCATCGACACTGAGTTCCC
AGGCGTCCTCATCCGCCCCACCCTCCCCCGCCACCCTCTCCGCCCTTCCGATCACTACCTCCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAACTCGGTCTCA
CCCTCTCCGACGCCCACGGCAACCTCCCCACACTCGGCACCAAAAACTCCTTCATCTGGGAGTTCAATTTCAGGGATTTCGACGTTGCACGCGACCCCCACGCCCCGGAT
TCCATCGAGCTCTTGAAACAACAGGGGATTGATTTCCACCGGAACAGAACTCATGGGGTTTGCTCCTCCCGGTTCGCCGACTTGGTGATGTCATCCGGTCTTTTGTGCAA
TGACTCCCTCACTTGGGTTACCTTTCACAGCGCCTATGACTTTGGTTACTTGGTTAAGATTCTCACCCGGACCAAACTGCCGTCTCGGCTTCAGGATTTCTTGAACATTC
TCAAGGGGTTGTTTGGGAAAAAGGTTTATGACGTGAAGCATATGATGCGGTTCTGTGATGGGCTTTATGGGGGTTTGGACCGCCTTGCTAAAACGCTTGATTTGGACCGG
GCGGTTGGGAAATCCCATCAGGCCGGTTCTGATTCCCTCCTCACATTCCAAGCTTTTAAGAAGATGAGTGATGTTTACTTCTCAAAGGATGGCCCGGACAAGCACGCCGG
CGTCTTGTTTGGTTTAGAATTGTATTGA
mRNA sequenceShow/hide mRNA sequence
GCGAAGCATTGGAAAAGGTAAACGTGATTAAAGGAAAAAGGAGAGGAAGGGAAATGGAAAGACGGCAAAGGCACATTGAGAAGCATCTTCGCCCATTCCTTTCCATTTGA
GCATTCAAACACGTTCATCCCACAGTTTCCATTTCCACTCAACAATAATCAAACTAAACCCTTTTCAATTCCTTTCTCCATCCATCTTCTAATCTTTATAAACACCACAT
AATATCCTCAATTCTCCCCAATTCTCAAACTATGTTAATCCAAACCCGTCAGGTCTGGGATCTCAATCTCCTTCATGAATTCAATCTCATCACTCAACTCCTCCACCGCT
ACCCTTTCATCTCCATCGACACTGAGTTCCCAGGCGTCCTCATCCGCCCCACCCTCCCCCGCCACCCTCTCCGCCCTTCCGATCACTACCTCCTCCTCAAGTCCAACGTC
GACGCTCTCAACCTAATCCAACTCGGTCTCACCCTCTCCGACGCCCACGGCAACCTCCCCACACTCGGCACCAAAAACTCCTTCATCTGGGAGTTCAATTTCAGGGATTT
CGACGTTGCACGCGACCCCCACGCCCCGGATTCCATCGAGCTCTTGAAACAACAGGGGATTGATTTCCACCGGAACAGAACTCATGGGGTTTGCTCCTCCCGGTTCGCCG
ACTTGGTGATGTCATCCGGTCTTTTGTGCAATGACTCCCTCACTTGGGTTACCTTTCACAGCGCCTATGACTTTGGTTACTTGGTTAAGATTCTCACCCGGACCAAACTG
CCGTCTCGGCTTCAGGATTTCTTGAACATTCTCAAGGGGTTGTTTGGGAAAAAGGTTTATGACGTGAAGCATATGATGCGGTTCTGTGATGGGCTTTATGGGGGTTTGGA
CCGCCTTGCTAAAACGCTTGATTTGGACCGGGCGGTTGGGAAATCCCATCAGGCCGGTTCTGATTCCCTCCTCACATTCCAAGCTTTTAAGAAGATGAGTGATGTTTACT
TCTCAAAGGATGGCCCGGACAAGCACGCCGGCGTCTTGTTTGGTTTAGAATTGTATTGAATTATTAATTAAGTATATACATATATATAAATAATATTCAATTTATTATTT
CATCATTACTATTATTCCATGAAATATTTTTGTAGTGAATGTGCATTTATTGGGCTTATGGCCCATGGAATAAATGGACTTGTTCCGTTGAGGCTGAATGTTGGTTGGGC
CCAGACATTATGTATGGGTTGCCAGTCTCATGAGAGAGACCAAAGCCCGTCTACTCACCGTAGGGCTTTTCGTACAAGTGG
Protein sequenceShow/hide protein sequence
MLIQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLPRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDVARDPHAPD
SIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLNILKGLFGKKVYDVKHMMRFCDGLYGGLDRLAKTLDLDR
AVGKSHQAGSDSLLTFQAFKKMSDVYFSKDGPDKHAGVLFGLELY